View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3829_low_5 (Length: 216)
Name: NF3829_low_5
Description: NF3829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3829_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 51237846 - 51238043
Alignment:
| Q |
1 |
atcccaacaaataaaaggcataagagacacaagcaagcatccggtatatcgtggtgtccgaatgcgaaattggggaaaatgggtgtccgaaattcgtgag |
100 |
Q |
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| T |
51237846 |
atcccaacaaataaaaggcataagagacacaagcaagcatccggtatatcgtggtgtccgaatgcgaaattggggaaaatgggtgtccgaaattcgtgag |
51237945 |
T |
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| Q |
101 |
cctaagaaaaaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcacacgatgtagctgctctcagtataaaaggaagtgc |
198 |
Q |
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| T |
51237946 |
cctaagaaaaaatcccgaatatggctcggcacatttcccacaccggaaatggcagctcgagcacacgatgtagctgctctcagtataaaaggaagtgc |
51238043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 505656 - 505544
Alignment:
| Q |
66 |
gaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcaca |
165 |
Q |
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| T |
505656 |
gaaattgggggaaatttgtgtgtgagattcgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcaca |
505557 |
T |
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| Q |
166 |
cgatgtagctgct |
178 |
Q |
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| T |
505556 |
tgatgtagctgct |
505544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 4268648 - 4268757
Alignment:
| Q |
65 |
cgaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcac |
164 |
Q |
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| T |
4268648 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
4268747 |
T |
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| Q |
165 |
acgatgtagc |
174 |
Q |
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| T |
4268748 |
acgatgtagc |
4268757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 3996512 - 3996397
Alignment:
| Q |
47 |
tatcgtggtgtccgaatgcgaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccag |
146 |
Q |
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| T |
3996512 |
tatcgtggagtaagaatgcgtagttggggaaaatgggtttcagaaattagagagcccaagaaaaaatcaagaatttggctaggcacttatccaacacccg |
3996413 |
T |
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| Q |
147 |
aaatggctgctcgagc |
162 |
Q |
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| T |
3996412 |
agatggcagctcgagc |
3996397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 16357926 - 16357819
Alignment:
| Q |
71 |
tggggaaaatgggtgtccgaaattcgtgagcctaagaaa-aaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcacacgat |
169 |
Q |
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|||||||||||||| || |||||||||||||| |||||| || || |||||||||| || |||| || ||| | |||||||| ||| |||| || ||| |
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| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagcc-aagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgat |
16357828 |
T |
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| Q |
170 |
gtagctgct |
178 |
Q |
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||||||||| |
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| T |
16357827 |
gtagctgct |
16357819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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