View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3830_high_1 (Length: 327)
Name: NF3830_high_1
Description: NF3830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3830_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 119 - 317
Target Start/End: Complemental strand, 50075775 - 50075577
Alignment:
| Q |
119 |
aaatttagttacttataaatttatgatcttccgtacaactttatggaaagaacggttagttatatttgtggatgtctaccgatattttaaaatctactaa |
218 |
Q |
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| T |
50075775 |
aaatttagttacttataaatttatgatcttccgtacaactttatggaaagaacggttagttatatttgtggatgtctaccgatattgcaaaatctactaa |
50075676 |
T |
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| Q |
219 |
aagatcgactataaggtatttctgtgtatatgacagacacaaatgacacatttaaaactctgcaagagtttatattatatagtatcaaagtgccctatg |
317 |
Q |
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| T |
50075675 |
aagatcgactatcaggtatttctgtgtatatgacaggcacaaatgacacttttaaaactctgcaagagtttatattatatagtatcaaagtgccctatg |
50075577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 119 - 317
Target Start/End: Complemental strand, 50069752 - 50069554
Alignment:
| Q |
119 |
aaatttagttacttataaatttatgatcttccgtacaactttatggaaagaacggttagttatatttgtggatgtctaccgatattttaaaatctactaa |
218 |
Q |
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| T |
50069752 |
aaatttagttacttataaatttatgatcttccgtacaactttatggaaagaacggttatttatatttgtggatgtctaccgatattgcaaaatctactaa |
50069653 |
T |
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| Q |
219 |
aagatcgactataaggtatttctgtgtatatgacagacacaaatgacacatttaaaactctgcaagagtttatattatatagtatcaaagtgccctatg |
317 |
Q |
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| T |
50069652 |
aagatcgactatcaggtatttctgtgtatatgacaggcacaaatgacacttttaaaactctgcaagagtttatattatatagtatcaaagtgctctatg |
50069554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 50069864 - 50069782
Alignment:
| Q |
1 |
cttttgctatggaactgtgagatttgatgtctatctatgtatctcgatttttcactaaatcaatagaaatgaaagcattatct |
83 |
Q |
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| T |
50069864 |
cttttgctatggaactgtgagatttgatgtctatctatgtatctcgatttttcactaaatcaatagaaatgaaagcattatct |
50069782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 50075880 - 50075802
Alignment:
| Q |
1 |
cttttgctatggaactgtgagatttgatgtctatctatgtatctcgatttttcactaaatcaatagaaatgaaagcattatct |
83 |
Q |
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| T |
50075880 |
cttttgctatggaactgtgagatttgatgtctat----gtatctcgatttttcactaaatcaatagaaatgaaagcattatct |
50075802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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