View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3830_high_3 (Length: 220)
Name: NF3830_high_3
Description: NF3830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3830_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 50069856 - 50070016
Alignment:
| Q |
11 |
tagcaaagggagaaattaacaagtgaacactttatttcaacagaaattaagctaacttaaattaagaaaacaacaacaaactgggaagcacactcatgtt |
110 |
Q |
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| T |
50069856 |
tagcaaaaggagaaattaacaagtgatcaatttattttaacggaaattaagctaacttaaattaagaaaacaacaacaaattgggaagcacactcatgt- |
50069954 |
T |
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| Q |
111 |
taatgacgatagtaggaaggcttggtaagttggaggattacattggaagattaagaagacacaaa |
175 |
Q |
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| T |
50069955 |
---tgacgatagtaggaaggcttggtaagttggaggattacattggaagattaagaagacacaaa |
50070016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 50075872 - 50075995
Alignment:
| Q |
11 |
tagcaaagggagaaattaacaagtgaacactttatttcaacagaaattaagctaacttaaattaagaaaacaacaacaaactgggaagcacactcatgtt |
110 |
Q |
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| T |
50075872 |
tagcaaaaggagaaattaacaagtgaacactttatttcaa--------------acttaaattaagaaaacaacaacaaactgacaagcacactcatttt |
50075957 |
T |
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| Q |
111 |
taatgacgatagtaggaaggcttggtaagttggaggat |
148 |
Q |
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| T |
50075958 |
taatgacgatagtaggaaggcttggtaagttggaggat |
50075995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 50078660 - 50078704
Alignment:
| Q |
147 |
attacattggaagattaagaagacacaaaaacaactagcaagcac |
191 |
Q |
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| T |
50078660 |
attacattggaagattaagaagacacaaaaacaactagcaagcac |
50078704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 10797070 - 10797114
Alignment:
| Q |
147 |
attacattggaagattaagaagacacaaaaacaactagcaagcac |
191 |
Q |
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| T |
10797070 |
attacattggaagattaagaagacacaaaaacaactagcaagcac |
10797114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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