View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3831_low_2 (Length: 367)

Name: NF3831_low_2
Description: NF3831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3831_low_2
NF3831_low_2
[»] chr4 (9 HSPs)
chr4 (224-357)||(4598789-4598922)
chr4 (19-153)||(4598551-4598685)
chr4 (19-141)||(4623064-4623189)
chr4 (234-357)||(4623302-4623425)
chr4 (245-355)||(25016030-25016140)
chr4 (245-355)||(25037313-25037423)
chr4 (21-142)||(25015786-25015907)
chr4 (21-142)||(25037066-25037187)
chr4 (261-302)||(25002270-25002311)
[»] chr2 (2 HSPs)
chr2 (19-141)||(18805805-18805927)
chr2 (234-337)||(18805598-18805701)
[»] chr5 (1 HSPs)
chr5 (44-128)||(30363051-30363135)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 224 - 357
Target Start/End: Original strand, 4598789 - 4598922
Alignment:
Q  224 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4598789 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctcttcgagtga 4598888  T
Q  324 cagcgttgaatcattgtcctcgttcatacctatg 357  Q
    ||||||||||||||||||||||||||||||||||    
T  4598889 cagcgttgaatcattgtcctcgttcatacctatg 4598922  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 4598551 - 4598685
Alignment:
Q  19 agggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  4598551 agggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgcacggtgtatccgtcactccattcaaagttgtccaaaagggaccatgca 4598650  T
Q  119 aaatatccttgcacattcacaccactcctacacac 153  Q
    ||||||||||||||||||||||||| |||||||||    
T  4598651 aaatatccttgcacattcacaccacgcctacacac 4598685  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 4623064 - 4623189
Alignment:
Q  19 agggtgtcttttaagat---cattctcataatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccat 115  Q
    |||||||||| ||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4623064 agggtgtcttgtaagatgaccattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattcaaagttgtccaaaagggaccat 4623163  T
Q  116 gcaaaatatccttgcacattcacacc 141  Q
    |||||||||||||| || ||||||||    
T  4623164 gcaaaatatccttgtaccttcacacc 4623189  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 234 - 357
Target Start/End: Original strand, 4623302 - 4623425
Alignment:
Q  234 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 333  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |    
T  4623302 agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga 4623401  T
Q  334 tcattgtcctcgttcatacctatg 357  Q
    |||||| | || ||||||||||||    
T  4623402 tcattgacttcattcatacctatg 4623425  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
Q  245 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 344  Q
    |||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||||||||| || || ||||| ||||| || |||| |||||||  |||    
T  25016030 tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc 25016129  T
Q  345 gttcataccta 355  Q
    || ||||||||    
T  25016130 gtccataccta 25016140  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
Q  245 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 344  Q
    |||||||||| |||| |||||| ||||| |||||| ||||||| ||||||| |||||||||||| |||||||| ||||| ||||||| ||||||   |||    
T  25037313 tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc 25037412  T
Q  345 gttcataccta 355  Q
    || ||||||||    
T  25037413 gtccataccta 25037423  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 25015786 - 25015907
Alignment:
Q  21 ggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaa 120  Q
    ||||||||||||||| ||  |  |||| |||| |||| ||||||||||||  |||||||||  |   ||||||||||||||||||||| |||||||||||    
T  25015786 ggtgtcttttaagattatcattgtaattaacatagttcattccaaaacgtctagtgtatccagccagccattcaaagttgtccaaaagtgaccatgcaaa 25015885  T
Q  121 atatccttgcacattcacacca 142  Q
    ||||||||| || |||||||||    
T  25015886 atatccttgtactttcacacca 25015907  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 25037066 - 25037187
Alignment:
Q  21 ggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaa 120  Q
    ||||||||||||||| ||  |  ||||| |||||||||||||||||||||    |||||||| |   ||||||||||||||| ||||| |||||||||||    
T  25037066 ggtgtcttttaagattatctttgtaatctacaaagttaattccaaaacgtcttctgtatccggccagccattcaaagttgtctaaaagtgaccatgcaaa 25037165  T
Q  121 atatccttgcacattcacacca 142  Q
    ||||||||| || |||||||||    
T  25037166 atatccttgtactttcacacca 25037187  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
Q  261 ataatatagatgacgataatagtaatcaattctgttagtatc 302  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  25002311 ataataaagatgacgataaaagtaatcaattctgtcagtatc 25002270  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 18805927 - 18805805
Alignment:
Q  19 agggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgca 118  Q
    ||||| ||||||||||| ||| |   |||||||||||||||||||||||||||  |||||||||||   ||||||||| ||||| |||||||||||||||    
T  18805927 agggtatcttttaagattatttttgaaatcaacaaagttaattccaaaacgtaaggtgtatccgtcttgccattcaaaattgtcgaaaagggaccatgca 18805828  T
Q  119 aaatatccttgcacattcacacc 141  Q
    ||||||||||| |||||||||||    
T  18805827 aaatatccttgtacattcacacc 18805805  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 18805701 - 18805598
Alignment:
Q  234 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 333  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| |    
T  18805701 agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga 18805602  T
Q  334 tcat 337  Q
    ||||    
T  18805601 tcat 18805598  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 30363135 - 30363051
Alignment:
Q  44 taatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatcctt 128  Q
    ||||| |||||||| |||||||| |  || ||||| || |||| ||||||||| |||||||| || ||||| |||||||||||||    
T  30363135 taatctacaaagttcattccaaacctcactgtgtacccttcaccccattcaaaattgtccaatagcgaccacgcaaaatatcctt 30363051  T

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