View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3831_low_3 (Length: 361)
Name: NF3831_low_3
Description: NF3831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3831_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 36282177 - 36282464
Alignment:
| Q |
22 |
cataaacaccctccctccaatcaaggatcattctagaataaagtagtctcttcgtcatccaaattgcaactaatcccttctttaaaccaactttcctcac |
121 |
Q |
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| T |
36282177 |
cataaacaccctccctccaatcaaggatcattctagaataaagtagtttcttcgtcatccaaattgcaactaatcccttctttaaaccaatttccctcac |
36282276 |
T |
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| Q |
122 |
cacccgactcccctgcaccaatcacacaaatccttccaccacattgacgctttactccctcctatcctaatacgattattatatttgaaaattgaactca |
221 |
Q |
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||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36282277 |
cacttgactccccttcaccaagcacacaaatccttccaccacattgacgctttactccctcctctcctaatacgattattatatttgaaaattgaactca |
36282376 |
T |
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| Q |
222 |
ggttctagattcttcttaatttaaaaaagagttttagtttgcaatctaaatcatttgttgagaataaactttgtccgcgttctaattt |
309 |
Q |
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|||| |||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||| |
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| T |
36282377 |
agttccagattcttcttagtttaaagaagagttctagtttgcaatctaaatcaattgttgaggataaactttgcccgcgttctaattt |
36282464 |
T |
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