View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3831_low_4 (Length: 305)
Name: NF3831_low_4
Description: NF3831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3831_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 45303443 - 45303156
Alignment:
| Q |
1 |
cattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagtttcttcccttgaaaaactgattagaaaagactttgctt |
100 |
Q |
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| T |
45303443 |
cattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagtttcttcccttgaaaaactgattagaaaagactttgctt |
45303344 |
T |
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| Q |
101 |
ttttgtttgttaggtgttggattttgttggaaagtggcactgttattattgttattgatgttatgtttcaagaaattggtgatgtaataggacactgaat |
200 |
Q |
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| T |
45303343 |
ttttgtttgttaggtgttggattttgttggaaagtggcactgttattattgttattgatgttatgtttcaagaaattggtgatgtaataggacactgaat |
45303244 |
T |
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| Q |
201 |
ttgaatcaagtattttccttaaaatgcatttggactatgttggttcaagtatttaaataataatattctaaagggttggtgtttatag |
288 |
Q |
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| T |
45303243 |
ttgaatcaagtattttccttaaaatgcatttggactatgttggttcaagtatttaaataataatattctaaagggttggtgtttatag |
45303156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 45150059 - 45149990
Alignment:
| Q |
176 |
ttggtgatgtaataggacactgaatttgaatcaagtattttccttaaaatgcatttggactatgttggtt |
245 |
Q |
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| T |
45150059 |
ttggtgctgtaatgggacactgaatttgaatgaggtattttccttaaaatgcatttggactatcttggtt |
45149990 |
T |
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