View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3831_low_5 (Length: 290)
Name: NF3831_low_5
Description: NF3831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3831_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 48600259 - 48600003
Alignment:
| Q |
20 |
catgattatgcaacaaggttttaaataaggattttgtgatttcagctgttatagatgccgctttgcatggaatattagtcgtcttggtgtgaattaatca |
119 |
Q |
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| T |
48600259 |
catgattgtgtaacaaggttttaaataaggattttgtgatttcagctgttatagatgcagctttgcatggaatattagtcgtcttggtgtgaattaatca |
48600160 |
T |
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| Q |
120 |
cggtgttagctatctattgaacttatccaatagaagataagatagcatttcataagttatagcatagttaggtgataatactattgcatatgataatcct |
219 |
Q |
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| T |
48600159 |
cggtgttagctatctattgaacttatccaatagaagataagatagcatttcataagttatagcatagttaggtgataatactattgcatatgataatcct |
48600060 |
T |
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| Q |
220 |
tttcttctcccttgttcatgcattcatactgcaatgccatttttataatattcttcg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
48600059 |
tttcttctcccttgttcatgcattcatactgcaatgccatttttgtaatatttttcg |
48600003 |
T |
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