View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3831_low_7 (Length: 275)
Name: NF3831_low_7
Description: NF3831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3831_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 49739077 - 49739322
Alignment:
| Q |
15 |
tatagtcagtaaaggcatagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttg |
114 |
Q |
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| T |
49739077 |
tatagtcagtaaaggcatagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttg |
49739176 |
T |
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| Q |
115 |
taaaagggtactgttttcttgctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacctgaaactg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49739177 |
taaaagggtactgttttcttgctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacctgaaactg |
49739276 |
T |
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| Q |
215 |
gtagatgatgatgatttgttgaccctgtcatctcagttgcagtaat |
260 |
Q |
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| T |
49739277 |
gtagatgatgatgatttgttgaccctgtcatctcagttgcagtaat |
49739322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 36284202 - 36284122
Alignment:
| Q |
39 |
tccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaa |
119 |
Q |
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| T |
36284202 |
tccatttccaatagcaccaatagttcccacaaacatcaatacatgatcaagagagtctgcaaaagagaagagtttgtaaaa |
36284122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 51210908 - 51210670
Alignment:
| Q |
15 |
tatagtcagtaaaggcatagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttg |
114 |
Q |
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| T |
51210908 |
tatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttg |
51210809 |
T |
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| Q |
115 |
taaaagggtactgttttcttgctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacct---gaaa |
211 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||| | || |
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| T |
51210808 |
taaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaa |
51210709 |
T |
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| Q |
212 |
ctggtagatgatgatgatttgttgaccctgtcatctcagttg |
253 |
Q |
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| T |
51210708 |
ctggt---ggatgatgacttgttgaccctgtcatctcagttg |
51210670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 51197321 - 51197221
Alignment:
| Q |
28 |
ggcatagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactg |
127 |
Q |
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| T |
51197321 |
ggcattgagattccattcccaatagcaccaacagtcccaacaaacatcaataaatgatccaaagaatcagcaaatgagaaaagcttgtataagggtactg |
51197222 |
T |
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| Q |
128 |
t |
128 |
Q |
| |
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| T |
51197221 |
t |
51197221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 51143918 - 51143818
Alignment:
| Q |
31 |
atagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgttt |
130 |
Q |
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||||||| ||||||||||| |||||| | |||||| | || |||||||||| |||| ||| || |||||||||||||||||||| ||||||||||||| |
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| T |
51143918 |
atagagagtccattcccaatagcacccaaagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtactgttt |
51143819 |
T |
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| Q |
131 |
t |
131 |
Q |
| |
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| T |
51143818 |
t |
51143818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 51155062 - 51154965
Alignment:
| Q |
31 |
atagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgt |
128 |
Q |
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| T |
51155062 |
atagagagtccattcccaatagcacctacagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtactgt |
51154965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 29939142 - 29939237
Alignment:
| Q |
33 |
agagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgt |
128 |
Q |
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| T |
29939142 |
agagattccattcccaatagcacctacagtccccataagcatcaataaacaatccaaaggatcagcaaatgagaaaagcttgtataaggatactgt |
29939237 |
T |
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