View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3832_high_3 (Length: 397)
Name: NF3832_high_3
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3832_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 40847802 - 40847576
Alignment:
| Q |
11 |
cagagacgtgtaacatatggccagagcaataactgaatataggcatcattggctctaatacttcatgagacaacatccatagcataagccaaacaaaaag |
110 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40847802 |
cagaaacgtgtaacatatggcaagagcaataactgaatataggcatcattggctctaatacttcatgaaacaacatccatagcataagccaaacaaaaag |
40847703 |
T |
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| Q |
111 |
gcttctggtggttacgatattattacaagacataagtaattcacggaaaataag-nnnnnnnggt----------tagcctcttgaatgatgaaacttag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||| |
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| T |
40847702 |
gcttctggtggttacgatattattacaagacataagtaattcacggaaaataagaaaaaaaaggttagcatctcatagcatcttgaatgatgaaacttag |
40847603 |
T |
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| Q |
200 |
gatgttttacacggaattccctatgcc |
226 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
40847602 |
gatgttttacacggaattcactatgcc |
40847576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 40847389 - 40847341
Alignment:
| Q |
116 |
tggtggttacgatattattacaagacataagtaattcacggaaaataag |
164 |
Q |
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| T |
40847389 |
tggtggttacgatattattacaagacgcaagtactttacggaaaataag |
40847341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 378
Target Start/End: Complemental strand, 16724078 - 16723969
Alignment:
| Q |
268 |
tgttattttgcaagagacgttctctttctcaaaggctcaaaaaaggttttcttgcaaaatgtatttgccccacctgaagtttttctttcacttttatctc |
367 |
Q |
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| T |
16724078 |
tgttactttgcagaagacgttctctttctccaagcttcaaagaatgttttctag-aaaatttatctgctacaccagatatttttctttctcatttatctc |
16723980 |
T |
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| Q |
368 |
ctactcaacct |
378 |
Q |
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||||||||||| |
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| T |
16723979 |
ctactcaacct |
16723969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 297
Target Start/End: Complemental strand, 26150451 - 26150423
Alignment:
| Q |
269 |
gttattttgcaagagacgttctctttctc |
297 |
Q |
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| T |
26150451 |
gttattttgcaagagacgttctctttctc |
26150423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 10850851 - 10850966
Alignment:
| Q |
261 |
gtatcaatgttattttgcaagagacgttctctttctcaaaggctcaaaaaaggttttcttgcaaaatgtatttgccccacctgaagtttttctttcactt |
360 |
Q |
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| T |
10850851 |
gtatcaatgttattttgcaagagacgtcctctttctcaaaggctcaaaaaaggttttcttgcaaaatgtattcgccccacctgaagtttttcttt--ctt |
10850948 |
T |
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| Q |
361 |
ttatctcctactcaacct |
378 |
Q |
| |
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|||||||||||||||||| |
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| T |
10850949 |
ttatctcctactcaacct |
10850966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 10878365 - 10878480
Alignment:
| Q |
261 |
gtatcaatgttattttgcaagagacgttctctttctcaaaggctcaaaaaaggttttcttgcaaaatgtatttgccccacctgaagtttttctttcactt |
360 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
10878365 |
gtatcaatgttattttgcaagagacgtcctctttctcaaaggctcaaaaaaggttttcttgcaaaatgtattcgccccacctgaagtttttcttt--ctt |
10878462 |
T |
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| Q |
361 |
ttatctcctactcaacct |
378 |
Q |
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|
|||||||||||||||||| |
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| T |
10878463 |
ttatctcctactcaacct |
10878480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 378
Target Start/End: Original strand, 43724873 - 43724982
Alignment:
| Q |
268 |
tgttattttgcaagagacgttctctttctcaaaggctcaaaaaaggttttcttgcaaaatgtatttgccccacctgaagtttttctttcacttttatctc |
367 |
Q |
| |
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|||||||||||||||||||||||||||||| || || ||| |||||||| |||||| ||||||| || | || ||||||||||| ||||||| || |
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| T |
43724873 |
tgttattttgcaagagacgttctctttctccaa-actttaaataggttttcccgcaaaaattatttgctacaacagaggtttttctttctcttttatttc |
43724971 |
T |
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| Q |
368 |
ctactcaacct |
378 |
Q |
| |
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||||| ||||| |
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| T |
43724972 |
ctactaaacct |
43724982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 297
Target Start/End: Original strand, 2958094 - 2958129
Alignment:
| Q |
262 |
tatcaatgttattttgcaagagacgttctctttctc |
297 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
2958094 |
tatcaatgttattttgcaaaagacgttctctttctc |
2958129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 19352215 - 19352249
Alignment:
| Q |
262 |
tatcaatgttattttgcaagagacgttctctttct |
296 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
19352215 |
tatcaatgttattttgcaagagacattctctttct |
19352249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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