View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3832_high_7 (Length: 288)

Name: NF3832_high_7
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3832_high_7
NF3832_high_7
[»] chr1 (9 HSPs)
chr1 (20-278)||(15011193-15011451)
chr1 (20-274)||(15017312-15017566)
chr1 (24-278)||(15002300-15002554)
chr1 (20-278)||(15037213-15037470)
chr1 (24-278)||(15032651-15032899)
chr1 (24-278)||(14532410-14532664)
chr1 (20-278)||(14522285-14522543)
chr1 (214-278)||(15040937-15041001)
chr1 (21-113)||(14504340-14504432)
[»] scaffold0400 (2 HSPs)
scaffold0400 (20-278)||(12972-13239)
scaffold0400 (20-278)||(6684-6939)
[»] scaffold0365 (2 HSPs)
scaffold0365 (20-278)||(13615-13882)
scaffold0365 (20-278)||(7328-7583)
[»] chr8 (2 HSPs)
chr8 (20-113)||(17027247-17027340)
chr8 (20-113)||(17557739-17557832)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 15011451 - 15011193
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||     
T  15011451 ctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgtgcttgaagttcgacac 15011352  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| |||||| |||||||| |||||| |||||||||  || || ||||||||||||| || ||||||| |||||||||| ||||||||||||| |||||    
T  15011351 aaaaggtatgagatcccataaacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgataatgaa 15011252  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    | |||||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15011251 atttgccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg 15011193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 15017566 - 15017312
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  15017566 ctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgcttgaagttcgacaa 15017467  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| |||||| |||||||| |||||| |||||||||  || |||||||||||||| | || ||||||| || ||||||| || ||||||||||||||||    
T  15017466 aaaaagtatgagatcccataaacaattaatgctaacagtagaggacctagagtgagtgatagaactagcacccaaattttgtttgtcttatgattatgaa 15017367  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcc 274  Q
    | |||||||||||| ||||||||||||  || ||||||| |||||||||||||||    
T  15017366 acttgccaccagatattgagcaaggctctaggccagagatattaccacacaagcc 15017312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 15002554 - 15002300
Alignment:
Q  24 tacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaaaaaa 123  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  15002554 tacaccatttttccatcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgcttgaagttcgacaaaaaa 15002455  T
Q  124 tgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaaagtt 223  Q
     |||||| |||||||| |||||  |||||||||| || || || |||||||||| || ||||||| |||||||||| ||||| |||||| |||||||| |    
T  15002454 ggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggt 15002355  T
Q  224 gccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||||| ||||||||||||||||  || ||||| |||||||||||||||||||||    
T  15002354 gccacccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttg 15002300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 15037470 - 15037213
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |    
T  15037470 ctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgtgcttgaagttcgac-a 15037372  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    || | |||||| |||||||| |||||  |||||||||| || || || |||||||||| || ||||||| |||||||||| ||||| |||||| ||||||    
T  15037371 aagaggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaa 15037272  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    || ||||||| ||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15037271 aggtgccacccgatgttgagcaaggctctaggccagagacattaccacataagcctttg 15037213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 15032899 - 15032651
Alignment:
Q  24 tacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaaaaaa 123  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||| ||||    
T  15032899 tacaccattttgccatcaaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgcgcttgaaattcgacacaaaa 15032800  T
Q  124 tgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaaagtt 223  Q
     |||||| |||      |||||| |||||||||  || || ||||||||||||| || ||||||| |||||||||| |||||||||||||||||||| ||    
T  15032799 ggtatgagatc------acaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgattatgaaattt 15032706  T
Q  224 gccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15032705 gccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg 15032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 14532410 - 14532664
Alignment:
Q  24 tacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaaaaaa 123  Q
    ||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||| |||  | |||| |||||||||||||||||||||||||||||    
T  14532410 tacaccatttttccatcaaagctccatattgcaaatagattttcagtttgaaattcttctgcgtggttgtcttcttttgtgcttgaagtttgacaaaaaa 14532509  T
Q  124 tgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaaagtt 223  Q
     |||||| ||||| ||  |||   |||| ||||| || | ||||||||||||||||||||||||| ||||||| ||  ||||||||||| ||||||||||    
T  14532510 ggtatgagatcccgtaagcaaaaaatgccaacaatagagtacctagagtgaggggtaaaactagcaccaaaatattgctagtcttatgactatgaaagtt 14532609  T
Q  224 gccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||||| ||||||||||||  |   || |||||||||||||||||||||||||||    
T  14532610 gccacctgatgttgagcaacacactaggccagagacattaccacacaagcctttg 14532664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 14522285 - 14522543
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    ||||||||||||||| || |||||||||||||||  ||||||||||||| |||||||||||| | || |||||| ||||||||||||||||||   ||||    
T  14522285 ctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcaacaa 14522384  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    ||   |||||| |||||||| |||| | |||||||||| |  || ||||||||||||| |||||||||| |||||||||| ||||| |||||| |||| |    
T  14522385 aattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatgga 14522484  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||| ||||| ||||||||||||||||  || |||||||||||||| ||||||||||||    
T  14522485 agtttccacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg 14522543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 15041001 - 15040937
Alignment:
Q  214 tatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    ||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||    
T  15041001 tatgaaagttgccaccagatgttgagcaatgctctaggccagagacattaccacacaagcctttg 15040937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 14504432 - 14504340
Alignment:
Q  21 tcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 113  Q
    |||||||||||||| || ||||| |||||||||  ||||||||||||| | ||  |||||| ||||  ||||  |||||||||| | ||||||    
T  14504432 tcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgttcgaagtt 14504340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 13239 - 12972
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||| |||||||| || |||||||||||| || |||| ||||||||| |||||||||||| || |||||||| ||||||| | |||||||| ||  |     
T  13239 ctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtag 13140  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatga------- 212  Q
    |||| |||||| | |||||| |||| | |||||||||| || |  || |||||||||||||||||||| ||||||||||| ||||||||||||           
T  13139 aaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaa 13040  T
Q  213 --ttatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
      ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13039 agttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 6939 - 6684
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    ||||||||||| ||| || ||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||| ||||||||||||||||||| ||||     
T  6939 ctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacat 6840  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| | |||| |  ||||| | || | ||||| |||| || |  |||||||||| ||||||||| | | ||||||| |  |||||||||||| ||||||    
T  6839 aaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaa 6740  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||| |||||  |||||||||||||||  |  ||||||   ||||||||||||||||||    
T  6739 agttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 13882 - 13615
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||| |||||||| || |||||||||||| || |||| ||||||||| |||||||||||| || |||||||| ||||||| | |||||||| ||  |     
T  13882 ctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtag 13783  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatga------- 212  Q
    |||| |||||| | |||||| |||| | |||||||||| || |  || |||||||||||||||||||| ||||||||||| ||||||||||||           
T  13782 aaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaa 13683  T
Q  213 --ttatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
      ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13682 agttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 13615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 7583 - 7328
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    ||||||||||| ||| || ||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||| ||||||||||||||||||| ||||     
T  7583 ctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacat 7484  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| | |||| |  ||||| | || | ||||| |||| || |  |||||||||| ||||||||| | | ||||||| |  |||||||||||| ||||||    
T  7483 aaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaa 7384  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||| |||||  |||||||||||||||  |  ||||||   ||||||||||||||||||    
T  7383 agttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 17027340 - 17027247
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 113  Q
    ||||||||||||||| || ||||||||||||| | |||||||||| ||| ||||||||| || ||  ||||||| |||||||||  ||||||||    
T  17027340 ctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagtt 17027247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 17557832 - 17557739
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 113  Q
    ||||||||||||||| || ||||||||||||| | |||||||||| ||| ||||||||| || ||  ||||||| |||||||||  ||||||||    
T  17557832 ctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagtt 17557739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University