View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3832_low_1 (Length: 616)
Name: NF3832_low_1
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3832_low_1 |
 | |
|
| [»] scaffold0085 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 597
Target Start/End: Original strand, 981835 - 982429
Alignment:
| Q |
11 |
cacagagaagttaatgaccaacaatcaaagcaaatatatccaaattccaaattgtttggtcgtcgtaaaaatggatgcaagaagagagcgttagttttgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
981835 |
cacagagaagttaatgaccaacaatcaaagcaaatctatccaaattccaaattgtttggtcgtcgtaaaaatggatgcaagaagagagcggtagttttgt |
981934 |
T |
|
| Q |
111 |
gcatacaataggtaatacaattgatatcataggcttgagttttgtgcatgaacaaagagcactc------ttaccga-ttgattcgataggtttggtttt |
203 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
981935 |
gcatacgataggtaatacaattgatatcataggcttgagttttgtgcatgaacaaagagcactcatgatcttaccaaattgattcgataggtttggtttt |
982034 |
T |
|
| Q |
204 |
ttatttgaccaaagaaattaaagggtataacttttaatttgttttaatcaaaaacgttccacttacactattccattaactttaatttccccattgacct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
982035 |
ttatttgaccaaagaaattaaagggtataacttttaatttgttttaatcaaaaacgttccacatacactattccattgattttaatttccccattgacct |
982134 |
T |
|
| Q |
304 |
taatgtttagaatgcaaattggtataaagaaaatgaggaggagcagagacgatgaacattccgtcggccgttgaatagggaggtaaaattgaaaatgtaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
982135 |
taatgtttagaatgcaaattggtataaagaaaatgaggaagagaagagacgatgaacattccgtcggccgttgaacagggaggtaaaattgaaaatgtaa |
982234 |
T |
|
| Q |
404 |
tcaccgacaacaatcaatttatgaaataatccagttggttgatcaattataattttgaaatagacactttcattgttgttcattcaagctttgttggtta |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
982235 |
tcaccgacaacaatcaatttatgaaataatccagtttgttgatcaattataattttgaaatagacactttcattgttgttcattcaagctttgttggtta |
982334 |
T |
|
| Q |
504 |
gagcaaaggagaacgaggagtgtgcagattaggagggatc-aatggagaaaagttcacgtgagttaatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
982335 |
gaggaaaggagaacgaggagtgtgcagattaggagggatcaaatggagaaaagttcacgtgagttaatttcacaataattatgacccttggatta |
982429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 11 - 597
Target Start/End: Original strand, 24453120 - 24453712
Alignment:
| Q |
11 |
cacagagaagttaatgaccaacaatcaaagcaaatatatccaaattccaaattgtttggtcgtcgtaaaaatggatgcaagaagagagcgttagttttgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24453120 |
cacagagaagttaatgaccaacaatcaaagcaaatctatccaaatttcaaattgtttggtcgtcgtaaaaatggatgcaagaagagagcgttagttttgt |
24453219 |
T |
|
| Q |
111 |
gcatacaataggtaatacaattgatatcataggcttgagttttgtgcatgaacaaagagcactc------ttaccgattgattcgataggtttggttttt |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
24453220 |
gcataagataggtaatacaattgatatcataggcttgagttttgtgcatgaacaaagagcactcatgatcttaccaattgattcgataggtttggttttt |
24453319 |
T |
|
| Q |
205 |
tatttgaccaaagaaattaaagggtataacttttaatttgttttaatcaaaaacgttccacttacactattccattaactttaatttccccattgacctt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24453320 |
tatttgaccaaagaaattaaagggtataacttttaatttgttttaatcaaaaacgttccacatacactattccattaactttaatttccccattgacctt |
24453419 |
T |
|
| Q |
305 |
aatgtttagaatgcaaattggtataaagaaaatgaggaggagcagagacgatgaacattccgtcggccgttgaatagggaggtaaaattgaaaatgtaat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
24453420 |
aatgtttagaatgcaaattggtataaagaaaatgaggaagagaagagacgatgaacattccgtcggccgttgaacaaggaggtaaaattgaaaatgtaat |
24453519 |
T |
|
| Q |
405 |
caccgacaacaatcaatttatgaaataatccagttggttgatcaattataattttgaaatagacactttcattgttgttcattcaagctttgttggttag |
504 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24453520 |
caccgacaacaatcaatttatgaaataattcagttggttgatcaattataattttgaaatagacactttcattgttgttcattcaagctttgttggttag |
24453619 |
T |
|
| Q |
505 |
agcaaaggagaacgaggagtgtgcagattaggagggatc-aatggagaaaagttcacgtgagttaatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
24453620 |
agcaaagaagaatgaggagtgtgcagattaggagggatcaaatggagaaaagttcacgtgagttaatttca-aataattatgacccttggatta |
24453712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 470 - 597
Target Start/End: Original strand, 1418170 - 1418299
Alignment:
| Q |
470 |
ctttcattgttgttcattcaagctttgttggttagagcaaaggagaacgag-gagtgtgcagattaggagggatcaa-tggagaaaagttcacgtgagtt |
567 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||| ||||||||||| | | |||||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
1418170 |
ctttcattgttgttctttcaagatttggtggttagcgcaaaggagaaggtgtgagtgtgcagattaggggggatcaagtggagaacggttcacgtgagtt |
1418269 |
T |
|
| Q |
568 |
aatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
|||||||||||||||| || ||||||||| |
|
|
| T |
1418270 |
aatttcacaataattaggacgcttggatta |
1418299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 460 - 597
Target Start/End: Complemental strand, 8376193 - 8376057
Alignment:
| Q |
460 |
gaaatagacactttcattgttgttcattcaagctttgttggttagagcaaaggagaacgaggagtgtgcagattaggagggatca-atggagaaaagttc |
558 |
Q |
| |
|
|||| ||||||||| |||||||||| ||||||||||| ||||||| || ||||||| |||||||||||||||||| ||||||| || |||||| |||| |
|
|
| T |
8376193 |
gaaaaagacacttttattgttgttctttcaagctttgctggttagcgcttaggagaaagaggagtgtgcagattag--gggatcagatcgagaaaggttc |
8376096 |
T |
|
| Q |
559 |
acgtgagttaatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
| |||||||||||| |||||||||| || |||||||||| |
|
|
| T |
8376095 |
atgtgagttaattttacaataattaggacccttggatta |
8376057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 470 - 597
Target Start/End: Complemental strand, 38225496 - 38225366
Alignment:
| Q |
470 |
ctttcattgttgttcattcaagctttgttggttagagcaaaggagaacgag-gagtgtgcagattaggagggatcaa-tggagaaaagttcacgtgag-t |
566 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||| | | ||| |||||||||||| |||||||| ||||||| ||||||||||| | |
|
|
| T |
38225496 |
ctttcattgttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtgcagattaggggggatcaagtggagaacggttcacgtgagtt |
38225397 |
T |
|
| Q |
567 |
taatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
|||||||||| |||||| | |||||||||| |
|
|
| T |
38225396 |
taatttcacagtaattagaacccttggatta |
38225366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 2533015 - 2533057
Alignment:
| Q |
425 |
tgaaataatccagttggttgatcaattataattttgaaataga |
467 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2533015 |
tgaaataatccagtttgttgatcaattataattttgaaataga |
2533057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 21156541 - 21156501
Alignment:
| Q |
427 |
aaataatccagttggttgatcaattataattttgaaataga |
467 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
21156541 |
aaataatctagcttgttgatcaattataattttgaaataga |
21156501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 597
Target Start/End: Original strand, 16054 - 16632
Alignment:
| Q |
14 |
agagaagttaatgaccaacaatcaaagcaaatatatccaaattccaaattgtttggtcgtcgtaaaaatggatgcaagaagagagcgttagttttgtgca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
16054 |
agagaagttaatgaccaacaatcaaagcaaatctatccaaattccaaattgtttgatcgtagtaaaaaaggatgcaagaagagggcgttagttttgtgca |
16153 |
T |
|
| Q |
114 |
tacaataggtaatacaattgatatcataggcttgagttttgtgcatgaacaaagagcactc------ttaccgattgattcgataggtttggttttttat |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
16154 |
tacgataggtaatacaattgatatcataggcttgagttttgtgcacgaacaaagagaactcatgatcttaccaattgattcgataggtttgattttttat |
16253 |
T |
|
| Q |
208 |
ttgaccaaagaaattaaagggtataacttttaatttgttttaatcaaaaacgttccacttacactattccattaactttaatttccccattgaccttaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16254 |
ttgaccaaagaaattaaagggtataacttttaatttgttttaatcaaaaacgttccacatacactattctattaactttaatttccccattgaccttaat |
16353 |
T |
|
| Q |
308 |
gtttagaatgcaaattggtataaagaaaatgaggaggagcagagacgatgaacattccgtcggccgttgaatagggaggtaaaattgaaaatgtaatcac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16354 |
gtttagaatgcaaattggtataaagaaaatgagaaagagaagagacgatgaacattccgtcggccgttgaatagggaggtaaaattgaaaattgaatcac |
16453 |
T |
|
| Q |
408 |
cgacaacaatcaatttatgaaataatccagttggttgatcaattataattttgaaatagacactttcattgttgttcattcaagctttgttggttagagc |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16454 |
cgacaacaatcaatctatgaaataatccagtttgttgatcaattataattttgaaatagacactttcattgttgttcattcaagctttgttggttagagc |
16553 |
T |
|
| Q |
508 |
aaaggagaacgaggagtgtgcagattaggagggatca-atggagaaaagttcacgtgagttaatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16554 |
aaaggagaaagagg------------aggagggatcagatggagaaaggttcacgtgagttaatttcacaataattatgacccttggatta |
16632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 470 - 597
Target Start/End: Complemental strand, 1553603 - 1553474
Alignment:
| Q |
470 |
ctttcattgttgttcattcaagctttgttggttagagcaaaggagaacgag-gagtgtgcagattaggagggatcaa-tggagaaaagttcacgtgagtt |
567 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||| | | ||| |||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
1553603 |
ctttcattgttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtgcagattaggggggatcaagtggagaacggttcacgtgagtt |
1553504 |
T |
|
| Q |
568 |
aatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
||||||||| |||||| | |||||||||| |
|
|
| T |
1553503 |
aatttcacagtaattagaacccttggatta |
1553474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 470 - 597
Target Start/End: Complemental strand, 22301390 - 22301261
Alignment:
| Q |
470 |
ctttcattgttgttcattcaagctttgttggttagagcaaaggagaacgag-gagtgtgcagattaggagggatcaa-tggagaaaagttcacgtgagtt |
567 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||| | | ||| |||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
22301390 |
ctttcattgttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtgcagattaggggggatcaagtggagaacggttcacgtgagtt |
22301291 |
T |
|
| Q |
568 |
aatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
||||||||| |||||| | |||||||||| |
|
|
| T |
22301290 |
aatttcacagtaattagaacccttggatta |
22301261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 460 - 579
Target Start/End: Complemental strand, 24120702 - 24120584
Alignment:
| Q |
460 |
gaaatagacactttcattgttgttcattcaagctttgttggttagagcaaaggagaacgaggagtgtgcagattaggagggatca-atggagaaaagttc |
558 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| |||||||| | |||| || |||||||||||| ||||| ||||||| ||||||||| |||| |
|
|
| T |
24120702 |
gaaaaagacactttcattgttgttctttcaagctttattggttagcgttgaggaaaaagaggagtgtgcaaattag--gggatcagatggagaaaggttc |
24120605 |
T |
|
| Q |
559 |
acgtgagttaatttcacaata |
579 |
Q |
| |
|
| |||||||||||| |||||| |
|
|
| T |
24120604 |
atgtgagttaattttacaata |
24120584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 597
Target Start/End: Complemental strand, 26752163 - 26752094
Alignment:
| Q |
529 |
agattaggagggatcaa-tggagaaaagttcacgtgagttaatttcacaataattatgatccttggatta |
597 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26752163 |
agattaggggggatcaagtggagaacggttcacgtgagttaatttcacaataattaggacccttggatta |
26752094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 597
Target Start/End: Original strand, 27441999 - 27442126
Alignment:
| Q |
471 |
tttcattgttgttcattcaagctttgttggttagagcaaaggagaacgag-gagtgtgcagattaggagggatcaa-tggagaaaagttcacgtgagtta |
568 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| ||||||||||| | | ||| ||| |||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
27441999 |
tttcattcttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtg-agattaggggggatcaagtggagaatggttcacgtgagtta |
27442097 |
T |
|
| Q |
569 |
atttcacaataattatgatccttggatta |
597 |
Q |
| |
|
|||||||| |||||| | |||||||||| |
|
|
| T |
27442098 |
atttcacagtaattagaacccttggatta |
27442126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 583
Target Start/End: Complemental strand, 183435 - 183320
Alignment:
| Q |
470 |
ctttcattgttgttcattcaagctttgttggttagagcaaaggagaacgag-gagtgtgcagattaggagggatcaa-tggagaaaagttcacgtgagtt |
567 |
Q |
| |
|
||||||||||||||| || |||||||| | ||| | ||||||||||| | ||||||||||||||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
183435 |
ctttcattgttgttcttttaagctttggtagttggcgcaaaggagaaggtttgagtgtgcagattagcggggatcaagtggagaacggttcatgtgagtt |
183336 |
T |
|
| Q |
568 |
aatttcacaataatta |
583 |
Q |
| |
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183335 |
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183320 |
T |
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