View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3832_low_10 (Length: 216)

Name: NF3832_low_10
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3832_low_10
NF3832_low_10
[»] chr5 (2 HSPs)
chr5 (1-200)||(454426-454625)
chr5 (124-200)||(470074-470150)
[»] chr1 (6 HSPs)
chr1 (54-191)||(47698389-47698526)
chr1 (118-196)||(47574620-47574698)
chr1 (118-194)||(47584322-47584398)
chr1 (118-201)||(47607323-47607406)
chr1 (115-191)||(47636542-47636618)
chr1 (116-160)||(47627254-47627298)
[»] chr3 (3 HSPs)
chr3 (115-196)||(1077344-1077425)
chr3 (115-196)||(1050441-1050522)
chr3 (115-196)||(1091184-1091265)
[»] chr6 (5 HSPs)
chr6 (124-200)||(20233237-20233313)
chr6 (124-200)||(22127221-22127297)
chr6 (124-200)||(18991047-18991123)
chr6 (124-200)||(21968265-21968341)
chr6 (136-200)||(22206837-22206901)
[»] chr8 (1 HSPs)
chr8 (124-188)||(10401678-10401742)
[»] chr4 (2 HSPs)
chr4 (115-191)||(36290572-36290648)
chr4 (118-191)||(14519920-14519993)
[»] chr7 (1 HSPs)
chr7 (118-163)||(20231542-20231587)
[»] scaffold0007 (1 HSPs)
scaffold0007 (124-200)||(7158-7234)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 454426 - 454625
Alignment:
Q  1 tcaattagatagtaacaagaaaaactaaagaatatatcattcaagtttgcagatacttactaagttccagcaattctcttagtatttccttgatgttcat 100  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  454426 tcaattagatagtaacaagaaaaactaaggaatatagcattcaagtttgcaaatacttactaagttccagcaattctcttagtatttccttgatgttcat 454525  T
Q  101 ctatatcaatcatgtttgccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454526 ctatatcaatcatttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 454625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 470074 - 470150
Alignment:
Q  124 ccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||| |||||||||||||||||||| || | ||||||||||| |||||||||||||||||| ||||||||||||||    
T  470074 ccaaaatctgatatttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtatgacttt 470150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 47698526 - 47698389
Alignment:
Q  54 tacttactaagttccagcaattctcttagtatttccttgatgttcatctatatcaatcatgtttgccatgccaaagtctgatatttttggattcatattc 153  Q
    ||||||||| |||||| ||||||| || ||| ||||| ||| || ||||| | | | |||  |||||||||| || || |||||||| |||||||| ||     
T  47698526 tacttactatgttccaacaattctatttgtacttcctcgatcttgatctagagccaccattcttgccatgccgaaatcagatattttaggattcatgtta 47698427  T
Q  154 ttatctaacaatatattgctaggtttgagatcacgatg 191  Q
    | ||||||||||| ||| ||||||||||||||||||||    
T  47698426 tcatctaacaatacattactaggtttgagatcacgatg 47698389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 47574698 - 47574620
Alignment:
Q  118 gccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 196  Q
    ||||||||||| |||||||||||||||||||||||   ||||||||  | || ||||||||| ||||||||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatga 47574620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 47584398 - 47584322
Alignment:
Q  118 gccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtat 194  Q
    ||||||||||| |||||||||||||| ||||| ||  ||||||| || | |||||||||||| ||||||||||||||    
T  47584398 gccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtat 47584322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 47607406 - 47607323
Alignment:
Q  118 gccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttt 201  Q
    ||||||||||| ||||| ||||| ||||||||||  | |||||| || ||||| |||||||| |||||||||||||| ||||||    
T  47607406 gccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataactttt 47607323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 47636618 - 47636542
Alignment:
Q  115 tttgccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 191  Q
    ||||||||||||||||| || ||||||||||||||||    ||| |||||||| ||||||| ||| |||||||||||    
T  47636618 tttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 47636542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 47627298 - 47627254
Alignment:
Q  116 ttgccatgccaaagtctgatatttttggattcatattcttatcta 160  Q
    ||||||||||||| || || ||||||||||||||||| |||||||    
T  47627298 ttgccatgccaaaatcagagatttttggattcatattgttatcta 47627254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 1077425 - 1077344
Alignment:
Q  115 tttgccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 196  Q
    ||||||| |||||| ||||||||||||||||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1077425 tttgccaagccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1077344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 1050522 - 1050441
Alignment:
Q  115 tttgccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 196  Q
    ||||||| |||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1050522 tttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1050441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 1091265 - 1091184
Alignment:
Q  115 tttgccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 196  Q
    ||||||| |||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1091265 tttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1091184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 20233313 - 20233237
Alignment:
Q  124 ccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||| ||||||||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || |||||    
T  20233313 ccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataacttt 20233237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 22127297 - 22127221
Alignment:
Q  124 ccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||| ||||||||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || |||||    
T  22127297 ccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataacttt 22127221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 18991047 - 18991123
Alignment:
Q  124 ccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||| ||||| ||||| ||| ||||||| |  ||||| |  |||||||||||||||||||| |||||||| |||||    
T  18991047 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataacttt 18991123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 21968265 - 21968341
Alignment:
Q  124 ccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||| ||||| ||||| ||| ||||||| | |||||| |  ||||| |||||||||||||| |||||||| |||||    
T  21968265 ccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataacttt 21968341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 22206901 - 22206837
Alignment:
Q  136 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||| ||| ||||||| | |||||| |  |||||||||||||||||||| |||||||| |||||    
T  22206901 attttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataacttt 22206837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 10401678 - 10401742
Alignment:
Q  124 ccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacg 188  Q
    ||||| ||||||||||||||| ||||||| | |||||| || ||||| ||||||||||| |||||    
T  10401678 ccaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacg 10401742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 36290648 - 36290572
Alignment:
Q  115 tttgccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 191  Q
    ||||||| |||||||||||| ||||||||||||||||| | ||| ||||| || ||||| | ||| ||||| |||||    
T  36290648 tttgccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatg 36290572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 14519920 - 14519993
Alignment:
Q  118 gccatgccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 191  Q
    |||| ||||||||| ||||||||||||||||| || | ||||||||| || || || ||||| ||||| |||||    
T  14519920 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatg 14519993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 20231587 - 20231542
Alignment:
Q  118 gccatgccaaagtctgatatttttggattcatattcttatctaaca 163  Q
    ||||| |||||||||||||||||||||||||  |||| ||||||||    
T  20231587 gccataccaaagtctgatatttttggattcaacttctcatctaaca 20231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 7234 - 7158
Alignment:
Q  124 ccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgacttt 200  Q
    ||||| ||||| ||||| ||| ||||||| |  ||||| |  |||||||||||||||||||| |||||||| |||||    
T  7234 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataacttt 7158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University