View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3832_low_2 (Length: 430)

Name: NF3832_low_2
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3832_low_2
NF3832_low_2
[»] chr3 (2 HSPs)
chr3 (18-409)||(51150599-51150968)
chr3 (18-409)||(51162900-51163269)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 51150968 - 51150599
Alignment:
Q  18 acgtaccacactcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatcnnnnnnnnn 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  51150968 acgtaccacgctcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatcaaaaaa--- 51150872  T
Q  118 nnnnnntaggcaaattagaaagtgctattacnnnnnnnccctaacaaaatttcacgaacatgttattgatataattaaattcagtaattaactatttgag 217  Q
          |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  51150871 ------taggcaaattagaaagtgctattactttttttccctaacaaaatttcacgaacatgttattgatataattaa-------------ctatttgag 51150791  T
Q  218 ttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtnnnnnnnnnctag 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  51150790 ttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtaaaagaaaactag 51150691  T
Q  318 gatcgttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcgaaatct 409  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51150690 gatctttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcaaaatct 51150599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 51163269 - 51162900
Alignment:
Q  18 acgtaccacactcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatcnnnnnnnnn 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  51163269 acgtaccacgctcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatcaaaaaa--- 51163173  T
Q  118 nnnnnntaggcaaattagaaagtgctattacnnnnnnnccctaacaaaatttcacgaacatgttattgatataattaaattcagtaattaactatttgag 217  Q
          |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  51163172 ------taggcaaattagaaagtgctattactttttttccctaacaaaatttcacgaacatgttattgatataattaa-------------ctatttgag 51163092  T
Q  218 ttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtnnnnnnnnnctag 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  51163091 ttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtaaaagaaaactag 51162992  T
Q  318 gatcgttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcgaaatct 409  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51162991 gatctttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcaaaatct 51162900  T

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