View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3832_low_5 (Length: 371)
Name: NF3832_low_5
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3832_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 36027395 - 36027068
Alignment:
| Q |
19 |
acacatgagatctcctatctcattctcaattaatgtgaatgtggtacaatacaaagtccacataaactaagctaaccaataccaaaaaagtgaaggacnn |
118 |
Q |
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| T |
36027395 |
acacatgagatctcctatctcattctcaattaatgtgaatgtggtacaatacaaagtccacataaactaagctaaccaataccaaaaaagtgaaggacat |
36027296 |
T |
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| Q |
119 |
nnnnnnnnnnnngcatccaatccatgatagttgtcataatgaaatttgcatgggaagggatattggaaataaacgaccaatggaggagcctaggagaaag |
218 |
Q |
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| T |
36027295 |
atatat------gcatccaatccatgatagttgtcataatgaaatttgcatgggaagggatattggaaataaacgaccaatggaggagcctaggagaaag |
36027202 |
T |
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| Q |
219 |
tattaattgtctcaatcagaaatagtatctatatatcagtgaatgactgagagagagttaagtcgaattagacacaagcatatatgtatgtatgtatacg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
36027201 |
tattaattgtctcaatcagaaatagtatctatatatcagtgaatgactgagagaaagttaagtccaattagacacaagcatatatgtat----gtatacg |
36027106 |
T |
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| Q |
319 |
tacatgcatatcagtccttcacagttcacgggtctctg |
356 |
Q |
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| T |
36027105 |
tacatgcatatcagtccttcatagttcacgggtctctg |
36027068 |
T |
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