View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3832_low_8 (Length: 288)

Name: NF3832_low_8
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3832_low_8
NF3832_low_8
[»] chr1 (9 HSPs)
chr1 (20-278)||(15011193-15011451)
chr1 (20-274)||(15017312-15017566)
chr1 (24-278)||(15002300-15002554)
chr1 (20-278)||(15037213-15037470)
chr1 (24-278)||(15032651-15032899)
chr1 (24-278)||(14532410-14532664)
chr1 (20-278)||(14522285-14522543)
chr1 (214-278)||(15040937-15041001)
chr1 (21-113)||(14504340-14504432)
[»] scaffold0400 (2 HSPs)
scaffold0400 (20-278)||(12972-13239)
scaffold0400 (20-278)||(6684-6939)
[»] scaffold0365 (2 HSPs)
scaffold0365 (20-278)||(13615-13882)
scaffold0365 (20-278)||(7328-7583)
[»] chr8 (2 HSPs)
chr8 (20-113)||(17027247-17027340)
chr8 (20-113)||(17557739-17557832)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 15011451 - 15011193
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||     
T  15011451 ctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgtgcttgaagttcgacac 15011352  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| |||||| |||||||| |||||| |||||||||  || || ||||||||||||| || ||||||| |||||||||| ||||||||||||| |||||    
T  15011351 aaaaggtatgagatcccataaacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgataatgaa 15011252  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    | |||||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15011251 atttgccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg 15011193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 15017566 - 15017312
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  15017566 ctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgcttgaagttcgacaa 15017467  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| |||||| |||||||| |||||| |||||||||  || |||||||||||||| | || ||||||| || ||||||| || ||||||||||||||||    
T  15017466 aaaaagtatgagatcccataaacaattaatgctaacagtagaggacctagagtgagtgatagaactagcacccaaattttgtttgtcttatgattatgaa 15017367  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcc 274  Q
    | |||||||||||| ||||||||||||  || ||||||| |||||||||||||||    
T  15017366 acttgccaccagatattgagcaaggctctaggccagagatattaccacacaagcc 15017312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 15002554 - 15002300
Alignment:
Q  24 tacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaaaaaa 123  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  15002554 tacaccatttttccatcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgcttgaagttcgacaaaaaa 15002455  T
Q  124 tgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaaagtt 223  Q
     |||||| |||||||| |||||  |||||||||| || || || |||||||||| || ||||||| |||||||||| ||||| |||||| |||||||| |    
T  15002454 ggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggt 15002355  T
Q  224 gccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||||| ||||||||||||||||  || ||||| |||||||||||||||||||||    
T  15002354 gccacccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttg 15002300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 15037470 - 15037213
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |    
T  15037470 ctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgtgcttgaagttcgac-a 15037372  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    || | |||||| |||||||| |||||  |||||||||| || || || |||||||||| || ||||||| |||||||||| ||||| |||||| ||||||    
T  15037371 aagaggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaa 15037272  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    || ||||||| ||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15037271 aggtgccacccgatgttgagcaaggctctaggccagagacattaccacataagcctttg 15037213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 15032899 - 15032651
Alignment:
Q  24 tacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaaaaaa 123  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||| ||||    
T  15032899 tacaccattttgccatcaaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgcgcttgaaattcgacacaaaa 15032800  T
Q  124 tgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaaagtt 223  Q
     |||||| |||      |||||| |||||||||  || || ||||||||||||| || ||||||| |||||||||| |||||||||||||||||||| ||    
T  15032799 ggtatgagatc------acaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgattatgaaattt 15032706  T
Q  224 gccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15032705 gccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg 15032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 14532410 - 14532664
Alignment:
Q  24 tacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaaaaaa 123  Q
    ||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||| |||  | |||| |||||||||||||||||||||||||||||    
T  14532410 tacaccatttttccatcaaagctccatattgcaaatagattttcagtttgaaattcttctgcgtggttgtcttcttttgtgcttgaagtttgacaaaaaa 14532509  T
Q  124 tgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaaagtt 223  Q
     |||||| ||||| ||  |||   |||| ||||| || | ||||||||||||||||||||||||| ||||||| ||  ||||||||||| ||||||||||    
T  14532510 ggtatgagatcccgtaagcaaaaaatgccaacaatagagtacctagagtgaggggtaaaactagcaccaaaatattgctagtcttatgactatgaaagtt 14532609  T
Q  224 gccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||||| ||||||||||||  |   || |||||||||||||||||||||||||||    
T  14532610 gccacctgatgttgagcaacacactaggccagagacattaccacacaagcctttg 14532664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 14522285 - 14522543
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    ||||||||||||||| || |||||||||||||||  ||||||||||||| |||||||||||| | || |||||| ||||||||||||||||||   ||||    
T  14522285 ctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcaacaa 14522384  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    ||   |||||| |||||||| |||| | |||||||||| |  || ||||||||||||| |||||||||| |||||||||| ||||| |||||| |||| |    
T  14522385 aattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatgga 14522484  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||| ||||| ||||||||||||||||  || |||||||||||||| ||||||||||||    
T  14522485 agtttccacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg 14522543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 15041001 - 15040937
Alignment:
Q  214 tatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    ||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||    
T  15041001 tatgaaagttgccaccagatgttgagcaatgctctaggccagagacattaccacacaagcctttg 15040937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 14504432 - 14504340
Alignment:
Q  21 tcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 113  Q
    |||||||||||||| || ||||| |||||||||  ||||||||||||| | ||  |||||| ||||  ||||  |||||||||| | ||||||    
T  14504432 tcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgttcgaagtt 14504340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 13239 - 12972
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||| |||||||| || |||||||||||| || |||| ||||||||| |||||||||||| || |||||||| ||||||| | |||||||| ||  |     
T  13239 ctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtag 13140  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatga------- 212  Q
    |||| |||||| | |||||| |||| | |||||||||| || |  || |||||||||||||||||||| ||||||||||| ||||||||||||           
T  13139 aaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaa 13040  T
Q  213 --ttatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
      ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13039 agttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 6939 - 6684
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    ||||||||||| ||| || ||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||| ||||||||||||||||||| ||||     
T  6939 ctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacat 6840  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| | |||| |  ||||| | || | ||||| |||| || |  |||||||||| ||||||||| | | ||||||| |  |||||||||||| ||||||    
T  6839 aaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaa 6740  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||| |||||  |||||||||||||||  |  ||||||   ||||||||||||||||||    
T  6739 agttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 13882 - 13615
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    |||||| |||||||| || |||||||||||| || |||| ||||||||| |||||||||||| || |||||||| ||||||| | |||||||| ||  |     
T  13882 ctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtag 13783  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatga------- 212  Q
    |||| |||||| | |||||| |||| | |||||||||| || |  || |||||||||||||||||||| ||||||||||| ||||||||||||           
T  13782 aaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaa 13683  T
Q  213 --ttatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
      ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13682 agttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 13615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 7583 - 7328
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtttgacaa 119  Q
    ||||||||||| ||| || ||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||| ||||||||||||||||||| ||||     
T  7583 ctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacat 7484  T
Q  120 aaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgattatgaa 219  Q
    |||| | |||| |  ||||| | || | ||||| |||| || |  |||||||||| ||||||||| | | ||||||| |  |||||||||||| ||||||    
T  7483 aaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaa 7384  T
Q  220 agttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 278  Q
    |||| |||||  |||||||||||||||  |  ||||||   ||||||||||||||||||    
T  7383 agttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 17027340 - 17027247
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 113  Q
    ||||||||||||||| || ||||||||||||| | |||||||||| ||| ||||||||| || ||  ||||||| |||||||||  ||||||||    
T  17027340 ctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagtt 17027247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 17557832 - 17557739
Alignment:
Q  20 ctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 113  Q
    ||||||||||||||| || ||||||||||||| | |||||||||| ||| ||||||||| || ||  ||||||| |||||||||  ||||||||    
T  17557832 ctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagtt 17557739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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