View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3832_low_9 (Length: 232)
Name: NF3832_low_9
Description: NF3832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3832_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 45179403 - 45179598
Alignment:
| Q |
23 |
gtctctgaagatttgatccagtcagcatttcaatatcgttattttcattcttggaaatatgaactcagtaattacataaagtgaaattgcaatactcaat |
122 |
Q |
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| T |
45179403 |
gtctctgaagatttgatccagtcagcatttcaatatcgttattttcattcttggaaatatgaactcggtaattacataaagtgaaattgcaatactcaat |
45179502 |
T |
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| Q |
123 |
gcatttgactcacaatatcagagaaaatgtttcaaaggcatgttgccaacctcgtctgtgaacccatggaagtaattacatattaaacacatgaat |
218 |
Q |
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| T |
45179503 |
gcatttgactcacaatatcagagaaaatgtttcaaaggcatgttgccaacctcttctgtgaacccatggaagtaattacatattaaacacatgaat |
45179598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 45172576 - 45172630
Alignment:
| Q |
17 |
ctggaggtctctgaagatttgatccagtcagcatttcaatatcgttattttcatt |
71 |
Q |
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| T |
45172576 |
ctggagggctctgaagatctgatccagttggcatttcaatatcgttgttttcatt |
45172630 |
T |
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