View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3833_high_11 (Length: 326)
Name: NF3833_high_11
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3833_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 95 - 308
Target Start/End: Original strand, 8386931 - 8387144
Alignment:
| Q |
95 |
gaaaccctaaaaccttggcacaacgaacttttcctttttcgagatgaactttttaaggctatcagatgttacattgtaggccagattactcacatataaa |
194 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
8386931 |
gaaaccctaaaaccttggcacaaagaacttttcctttttcgagatgaactttttaaggctatcagatgttacattgtaagccagattactcacatacaaa |
8387030 |
T |
|
| Q |
195 |
ttttagggagtgtcaacaaattccgatttccttagcttacctggagtgcaaatctaccgttgttagtgtcaagatttcaagagttcctgtcataaaaata |
294 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8387031 |
ttttagggagtgtcaacaaattccaatttccttaacttacctggagtgcaaatctaccgttgttagtgtcaagatttcaagagttcatgtcataaaaata |
8387130 |
T |
|
| Q |
295 |
tataggccaaattt |
308 |
Q |
| |
|
|||| |||| |||| |
|
|
| T |
8387131 |
tataagccagattt |
8387144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 8405365 - 8405477
Alignment:
| Q |
104 |
aaaccttggcacaacgaacttttcctttttc-gagatgaactttttaaggctatcagatgttacattgtaggccagattactcacatataaattttaggg |
202 |
Q |
| |
|
|||||||||||| | || | ||||||||||| |||| ||| |||||||||||||| ||||||||||| | |||||||| | |||||||| || || || |
|
|
| T |
8405365 |
aaaccttggcactaagagcatttcctttttccgagaagaattttttaaggctatcggatgttacattcttagccagatttcccacatataccttgtaagg |
8405464 |
T |
|
| Q |
203 |
agtgtcaacaaat |
215 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8405465 |
actgtcaacaaat |
8405477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University