View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3833_high_4 (Length: 412)
Name: NF3833_high_4
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3833_high_4 |
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| [»] scaffold1572 (1 HSPs) |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 21318827 - 21318451
Alignment:
| Q |
1 |
attaaattccaccatttctaatctctccttaactcttctcaagaccttttcctcatcatttaagctccctataacacccacctactctcaatttagatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21318827 |
attaaattccaccatttctaatctctccttaactcttctcaagaccttttcctcatcatttaagctccctataacacccacctactctcaatttagatat |
21318728 |
T |
|
| Q |
101 |
aagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaagtagattgattcactttgttaattctgaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||| |
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| T |
21318727 |
aagattgatgacagagtttccctatttcatagctgaatcaaaaacattcaagatttatcttacaaaagcaagtagattgattcgcttcctgaattctgaa |
21318628 |
T |
|
| Q |
201 |
caaacacatagtggatcaaaacatcgttacaagagcataataggttatgattcaaaacatataattacaaaaagaaatcaaaatgagcaaaaccttaaca |
300 |
Q |
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||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
21318627 |
caaacacatgattgatcagaacatcattacaagagcataataggttatgattcaaaacatataattacaaaaagaaatcaaaatgaaccaaaccttaaca |
21318528 |
T |
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| Q |
301 |
gagcaagacctttggaataaagccttgagaatgcacagaagttgaatatcc--atgggcataatagtaactctctaa |
375 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21318527 |
gaacaagacctatggaataaagccttgagaatgcacagaagttgaatatccatatgggcataatagtaactctctaa |
21318451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 3854761 - 3854688
Alignment:
| Q |
100 |
taagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaagt |
173 |
Q |
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| T |
3854761 |
taagactgatgacaaaatttccctatttcacagttgaatccaaaacattcaagttttatcttacaaaagcaagt |
3854688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 3915012 - 3915061
Alignment:
| Q |
129 |
atagctgaatcaaaaacattcaagatttatctaacaaaagcaagtagatt |
178 |
Q |
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|||| ||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
3915012 |
atagatgaatcaaaaacattaaagttttatctcacaaaagcaagtagatt |
3915061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 3929962 - 3930002
Alignment:
| Q |
339 |
aagttgaatatccatgggcataatagtaactctctaagcat |
379 |
Q |
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| T |
3929962 |
aagttgaatatccttcggcataatagtaactctcttagcat |
3930002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 21317701 - 21317661
Alignment:
| Q |
339 |
aagttgaatatccatgggcataatagtaactctctaagcat |
379 |
Q |
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||||||||||||| | ||||||||||||||||||| ||||| |
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| T |
21317701 |
aagttgaatatccttaggcataatagtaactctcttagcat |
21317661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 1292 - 1632
Alignment:
| Q |
1 |
attaaattccaccatttctaa-tctctccttaactcttctcaaga-------ccttttcct----catcatttaagctccctat--------aacaccca |
80 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||| | |||||||| |
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| T |
1292 |
attaaattccaccatttctaaatctctctttaactcttctcaagagtcgagaccttttccttcttcatcatttaagctccctgttcaaacttaacaccca |
1391 |
T |
|
| Q |
81 |
cctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaagtagattga |
180 |
Q |
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||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1392 |
cctactcgcaatttagacataagattgatgaccaagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaagtagattga |
1491 |
T |
|
| Q |
181 |
ttcactttgttaattctgaacaaacacatagtggatcaaaacatcgttacaagagcataataggttatgattcaaaacatataattacaaaaagaaatca |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1492 |
ttcactttgttaattctgaacaaacacatagtggatcagaacatcgttacaagagcataataggttatgattcaaaacatataattacaaaaagaaatca |
1591 |
T |
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| Q |
281 |
aaatgagcaaaaccttaacagagcaagacctttggaataaa |
321 |
Q |
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|||||| | ||||||||||||| |||||||| ||||||||| |
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| T |
1592 |
aaatgaaccaaaccttaacagaacaagacctatggaataaa |
1632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 31138 - 31098
Alignment:
| Q |
339 |
aagttgaatatccatgggcataatagtaactctctaagcat |
379 |
Q |
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||||||||||||| | ||||||||||||||||||| ||||| |
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| T |
31138 |
aagttgaatatccttaggcataatagtaactctcttagcat |
31098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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