View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3833_high_9 (Length: 338)
Name: NF3833_high_9
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3833_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 48231378 - 48231070
Alignment:
| Q |
11 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48231378 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
48231279 |
T |
|
| Q |
111 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48231278 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
48231179 |
T |
|
| Q |
211 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48231178 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
48231079 |
T |
|
| Q |
311 |
gaagcatgg |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
48231078 |
gaagcatgg |
48231070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 48236418 - 48236110
Alignment:
| Q |
11 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48236418 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
48236319 |
T |
|
| Q |
111 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48236318 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
48236219 |
T |
|
| Q |
211 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48236218 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
48236119 |
T |
|
| Q |
311 |
gaagcatgg |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
48236118 |
gaagcatgg |
48236110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University