View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3833_low_13 (Length: 318)
Name: NF3833_low_13
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3833_low_13 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 20134318 - 20134604
Alignment:
| Q |
11 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20134318 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaatcatcaatttacataacaaaatccatacatacaagactgtg |
20134417 |
T |
|
| Q |
111 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaat |
210 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
20134418 |
agtaggaatcatttaaattgttccaccggctgtgtcaagccaatcaaatttaaaataagaacaagaaaatagaataactactttggtatgaagatcgaat |
20134517 |
T |
|
| Q |
211 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggc |
297 |
Q |
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| T |
20134518 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggc |
20134604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 44357753 - 44357467
Alignment:
| Q |
11 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44357753 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaatcatcaatttacataacaaaatccatacatacaagactgtg |
44357654 |
T |
|
| Q |
111 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaat |
210 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
44357653 |
agtaggaatcatttaaattgttccaccggctgtgtcaagccaatcaaatttaaaataagaacaagaaaatagaataactactttggtatgaagatcgaat |
44357554 |
T |
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| Q |
211 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggc |
297 |
Q |
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| T |
44357553 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggc |
44357467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 47272 - 46984
Alignment:
| Q |
11 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47272 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaattatcaatttacataacaaaatccatacatacaagactgtg |
47173 |
T |
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| Q |
111 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaa--caagaaaatagaataactattttggtatgaaaatcga |
208 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| | || |||||||||||||||||||||||||||| |||||||| |
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| T |
47172 |
agtaggaatcatttaaattgttcccccggctacatcaagctaatcaaatttaaaacattaacccaagaaaatagaataactattttggtataaaaatcga |
47073 |
T |
|
| Q |
209 |
atcatctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggc |
297 |
Q |
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| T |
47072 |
atcatctattcttaagtattcttgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggc |
46984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 11203351 - 11203072
Alignment:
| Q |
14 |
agatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtgagt |
113 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
11203351 |
agatatcaatttaagaaggtaaggaggt--aacttcatatagaaaccaatttttaattatcagtttacatagcaaaatccatacatacaaggttgtgagt |
11203254 |
T |
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| Q |
114 |
aggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaatcat |
213 |
Q |
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| T |
11203253 |
aggaatcatttaaattgttccaccggctacatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtgtgaaaatcgaatcat |
11203154 |
T |
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| Q |
214 |
ctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccg |
295 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
11203153 |
ctattcttaaatatccctgtaaacagaattggagatatcattaagataacaacatcagttgttgcaaggactaatagcaccg |
11203072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 293
Target Start/End: Original strand, 4431557 - 4431696
Alignment:
| Q |
160 |
ttaaaataagaacaagaaaatagaataactattttggtat------gaaaatcgaatcatctattcttaaatattcctgtaaacagaattggagatatca |
253 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||| |||| |||| |
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| T |
4431557 |
ttaaaataagaactagaaaatagaataactattttggtatataaatgaaaatagaatcatcttatcttaaatattcccataaacagaatttgagacatca |
4431656 |
T |
|
| Q |
254 |
ttaagataatacaatcagttgttgcaaggattaatagcac |
293 |
Q |
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|||| || | | ||||||||| |||||| | ||||||||| |
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| T |
4431657 |
ttaaaattacataatcagttgctgcaagaactaatagcac |
4431696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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