View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3833_low_16 (Length: 252)

Name: NF3833_low_16
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3833_low_16
NF3833_low_16
[»] chr8 (11 HSPs)
chr8 (1-239)||(29824290-29824528)
chr8 (1-239)||(29838013-29838252)
chr8 (17-139)||(15904559-15904680)
chr8 (135-216)||(33252190-33252272)
chr8 (135-216)||(33267393-33267475)
chr8 (137-216)||(12388795-12388874)
chr8 (195-237)||(15904459-15904501)
chr8 (137-210)||(31349373-31349446)
chr8 (137-210)||(31363173-31363246)
chr8 (139-216)||(19667858-19667935)
chr8 (139-216)||(19683220-19683297)
[»] chr3 (16 HSPs)
chr3 (1-239)||(17998439-17998677)
chr3 (1-239)||(17967959-17968197)
chr3 (17-139)||(22862354-22862475)
chr3 (17-139)||(22877513-22877634)
chr3 (17-139)||(22892572-22892693)
chr3 (137-216)||(4410370-4410450)
chr3 (137-216)||(4425750-4425830)
chr3 (1-120)||(5460496-5460617)
chr3 (1-120)||(5475602-5475723)
chr3 (137-216)||(22769573-22769652)
chr3 (195-239)||(51775661-51775705)
chr3 (195-239)||(51790747-51790791)
chr3 (141-214)||(22490657-22490731)
chr3 (1-49)||(51775465-51775513)
chr3 (1-49)||(51790551-51790599)
chr3 (163-214)||(26681322-26681374)
[»] chr1 (8 HSPs)
chr1 (1-239)||(14415282-14415520)
chr1 (17-139)||(16559894-16560015)
chr1 (195-243)||(41784781-41784829)
chr1 (195-243)||(41800049-41800097)
chr1 (195-239)||(13768577-13768621)
chr1 (195-236)||(16559795-16559836)
chr1 (137-216)||(10933560-10933639)
chr1 (137-216)||(10971357-10971436)
[»] chr5 (25 HSPs)
chr5 (1-236)||(31817785-31818020)
chr5 (1-236)||(31832815-31833050)
chr5 (1-239)||(28951091-28951329)
chr5 (1-239)||(28967315-28967553)
chr5 (3-239)||(26488768-26489003)
chr5 (3-239)||(26473719-26473955)
chr5 (3-239)||(12125477-12125715)
chr5 (3-239)||(12140730-12140968)
chr5 (3-237)||(9310775-9311012)
chr5 (3-237)||(9326034-9326271)
chr5 (96-239)||(27288555-27288697)
chr5 (17-152)||(32587720-32587853)
chr5 (17-152)||(32606149-32606282)
chr5 (63-152)||(25639585-25639674)
chr5 (139-227)||(18366876-18366964)
chr5 (139-227)||(18381915-18382003)
chr5 (1-112)||(15750393-15750511)
chr5 (1-112)||(15765621-15765739)
chr5 (1-49)||(37209819-37209867)
chr5 (1-49)||(40465150-40465198)
chr5 (1-49)||(40480048-40480096)
chr5 (195-239)||(3783069-3783113)
chr5 (195-239)||(3798424-3798468)
chr5 (137-216)||(18492082-18492162)
chr5 (137-216)||(18507397-18507477)
[»] chr7 (20 HSPs)
chr7 (3-239)||(26311202-26311440)
chr7 (1-139)||(39993939-39994077)
chr7 (17-139)||(2781904-2782025)
chr7 (17-139)||(26428559-26428680)
chr7 (17-139)||(26443997-26444118)
chr7 (17-139)||(2769851-2769971)
chr7 (17-112)||(3057870-3057964)
chr7 (139-214)||(9613739-9613816)
chr7 (139-214)||(9841310-9841387)
chr7 (141-214)||(21996222-21996296)
chr7 (181-239)||(26695576-26695634)
chr7 (195-239)||(2770029-2770073)
chr7 (195-239)||(2782083-2782127)
chr7 (195-239)||(26266241-26266285)
chr7 (195-239)||(26326273-26326317)
chr7 (195-236)||(26428738-26428779)
chr7 (195-236)||(26444176-26444217)
chr7 (139-216)||(10834467-10834544)
chr7 (139-172)||(31081898-31081931)
chr7 (139-172)||(31093827-31093860)
[»] chr2 (23 HSPs)
chr2 (17-214)||(3780301-3780499)
chr2 (17-214)||(3792574-3792772)
chr2 (17-139)||(16861601-16861723)
chr2 (17-139)||(27797111-27797232)
chr2 (17-139)||(27812200-27812321)
chr2 (139-227)||(39883628-39883717)
chr2 (139-227)||(39899204-39899293)
chr2 (139-227)||(10984829-10984917)
chr2 (195-243)||(13928038-13928086)
chr2 (195-243)||(13943234-13943282)
chr2 (1-49)||(27212845-27212893)
chr2 (195-239)||(27797290-27797334)
chr2 (195-236)||(16861502-16861543)
chr2 (195-239)||(27812379-27812423)
chr2 (139-216)||(2729836-2729913)
chr2 (1-49)||(25911161-25911210)
chr2 (1-49)||(34152657-34152706)
chr2 (1-49)||(34163513-34163562)
chr2 (1-49)||(13928233-13928281)
chr2 (1-49)||(13943429-13943477)
chr2 (1-49)||(9341751-9341800)
chr2 (1-49)||(9356757-9356806)
chr2 (17-54)||(37943497-37943534)
[»] chr4 (5 HSPs)
chr4 (17-139)||(5406000-5406121)
chr4 (14-128)||(14107192-14107307)
chr4 (14-128)||(14092090-14092206)
chr4 (195-239)||(4565966-4566010)
chr4 (1-49)||(4566157-4566205)
[»] chr6 (20 HSPs)
chr6 (17-139)||(27620798-27620917)
chr6 (17-139)||(27636408-27636527)
chr6 (17-128)||(28200952-28201063)
chr6 (181-239)||(4766472-4766530)
chr6 (181-239)||(4786633-4786691)
chr6 (17-128)||(28216020-28216131)
chr6 (137-216)||(16667554-16667633)
chr6 (137-216)||(16682836-16682915)
chr6 (181-239)||(33367420-33367478)
chr6 (181-239)||(33378702-33378760)
chr6 (195-237)||(27620698-27620740)
chr6 (195-237)||(27636308-27636350)
chr6 (1-49)||(24049439-24049487)
chr6 (139-216)||(27191149-27191226)
chr6 (139-216)||(27203003-27203080)
chr6 (139-216)||(27246152-27246229)
chr6 (139-216)||(27258015-27258092)
chr6 (141-214)||(2651590-2651664)
chr6 (17-54)||(34455978-34456015)
chr6 (17-54)||(34470266-34470303)
[»] scaffold0038 (2 HSPs)
scaffold0038 (17-128)||(1450-1561)
scaffold0038 (17-128)||(16518-16629)
[»] scaffold0045 (1 HSPs)
scaffold0045 (139-214)||(91275-91352)
[»] scaffold0350 (2 HSPs)
scaffold0350 (195-239)||(13919-13963)
scaffold0350 (1-49)||(14110-14159)
[»] scaffold0159 (1 HSPs)
scaffold0159 (17-120)||(751-854)
[»] scaffold0143 (1 HSPs)
scaffold0143 (139-216)||(12621-12698)
[»] scaffold0279 (1 HSPs)
scaffold0279 (137-216)||(9860-9941)
[»] scaffold0196 (1 HSPs)
scaffold0196 (137-205)||(21987-22055)
[»] scaffold0182 (1 HSPs)
scaffold0182 (163-214)||(2607-2659)
[»] scaffold0418 (1 HSPs)
scaffold0418 (17-54)||(14649-14686)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 29824290 - 29824528
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  29824290 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 29824389  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29824390 acaaaattgcagggaggtcctcaaagtccaaaattgcaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 29824489  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29824490 gtcagctataaaagcaacacagtggcaatgaatttcaca 29824528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 29838013 - 29838252
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  29838013 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 29838112  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838113 acaaaattgcagggaggtcctcaaagtccaaaattgcaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 29838212  T
Q  201 gtcagctataaaagc-aacacagtggcaatgaatttcaca 239  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  29838213 gtcagctataaaagcaaacacagtggcaatgaatttcaca 29838252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 15904680 - 15904559
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    |||||||||||||| |||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  15904680 ttaaaattgcatttgagtccaaattgtccaatttttat-actttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 15904582  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  15904581 gtcctcaaagtccaaaattacaa 15904559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 33252190 - 33252272
Alignment:
Q  135 tacaaagccgtgccattt-cttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  33252190 tacaaagccgtgccattttcttctccaaatccaggtgtcctgttttcattggttcagatgcacacatgtcagctataaaagca 33252272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 33267393 - 33267475
Alignment:
Q  135 tacaaagccgtgccattt-cttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  33267393 tacaaagccgtgccattttcttctccaaatccaggtgtcctgttttcattggttcagatgcacacatgtcagctataaaagca 33267475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 12388874 - 12388795
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||| |||||||| |||||||||||| |||| ||||||||  ||| |||| |||||||||||||||||    
T  12388874 caaagccgtgccattttttctccaggtccaggtgtccttttcttattggttccaatgtacacatgtcagctataaaagca 12388795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 15904501 - 15904459
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttca 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15904501 acacttgtcagctataaaagcaacacagtggcaatgaatttca 15904459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 31349373 - 31349446
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctata 210  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||| |||  || |||| ||||| |||||    
T  31349373 caaagccgtgccatttcttctccagatccaggtgtcatgctctcattggctcaagtgtacacatgtcaactata 31349446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 31363173 - 31363246
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctata 210  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||| |||  || |||| ||||| |||||    
T  31363173 caaagccgtgccatttcttctccagatccaggtgtcatgctctcattggctcaagtgtacacatgtcaactata 31363246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 19667858 - 19667935
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  19667858 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 19667935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 19683220 - 19683297
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  19683220 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 19683297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 17998677 - 17998439
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  17998677 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 17998578  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998577 acaaaattgcagggaggtcctcaaagtccaaaattgcaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 17998478  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17998477 gtcagctataaaagcaacacagtggcaatgaatttcaca 17998439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 17968197 - 17967959
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  17968197 ttaatccttcaactttttaaaattgcatttaagtccaaactatccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 17968098  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17968097 acaaaattgcagggaggtcctcaaagtccaaaattgcaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 17967998  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17967997 gtcagctataaaagcaacacagtggcaatgaatttcaca 17967959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 22862475 - 22862354
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| |||||||||||| |        |||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  22862475 ttaaaattgcatttaagtccaaattgtccaattttt-tatattttgagttctgtttttaaaattgcagtccagtcccatattttacaaaattgcagggag 22862377  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  22862376 gtcctcaaagtccaaaattacaa 22862354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 22877634 - 22877513
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| |||||||||||| |        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  22877634 ttaaaattgcatttaagtccaaattgtccaattttt-tatattttgagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 22877536  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  22877535 gtcctcaaagtccaaaattacaa 22877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 22892693 - 22892572
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| |||||||||||| |        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  22892693 ttaaaattgcatttaagtccaaattgtccaattttt-tatattttgagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 22892595  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  22892594 gtcctcaaagtccaaaattacaa 22892572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 4410370 - 4410450
Alignment:
Q  137 caaagccgtgccatttcttctcca-gatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4410370 caaagccgtgccatttcttttccaagatccaggtgtcctgttctcattggttcagatgcacacatgtcagctataaaagca 4410450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 4425750 - 4425830
Alignment:
Q  137 caaagccgtgccatttcttctcca-gatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4425750 caaagccgtgccatttcttttccaagatccaggtgtcctgttctcattggttcagatgcacacatgtcagctataaaagca 4425830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5460496 - 5460617
Alignment:
Q  1 ttaatccttcaactttttaaaa-ttgcatttaagtccaaactgtccaatttttat-gnnnnnnnagttctatttttaaaattgcagtccagtcccatatt 98  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||| ||||||||||    
T  5460496 ttaatccttcaactttttaaaaattgcatttaagtccaaactgtccaatttttatattttttttagttctgtttttaaaattgcagtccggtcccatatt 5460595  T
Q  99 ttacaagattgcagggaggtcc 120  Q
    |||||| |||||||| ||||||    
T  5460596 ttacaaaattgcaggaaggtcc 5460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5475602 - 5475723
Alignment:
Q  1 ttaatccttcaactttttaaaa-ttgcatttaagtccaaactgtccaatttttat-gnnnnnnnagttctatttttaaaattgcagtccagtcccatatt 98  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||| ||||||||||    
T  5475602 ttaatccttcaactttttaaaaattgcatttaagtccaaactgtccaatttttatattttttttagttctgtttttaaaattgcagtccggtcccatatt 5475701  T
Q  99 ttacaagattgcagggaggtcc 120  Q
    |||||| |||||||| ||||||    
T  5475702 ttacaaaattgcaggaaggtcc 5475723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 22769652 - 22769573
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||| |||||||| |||||||||||| |||| ||||||||  ||| |||| |||||||||||||||||    
T  22769652 caaagccgtgccattttttctccaggtccaggtgtccttttcttattggttccaatgtacacatgtcagctataaaagca 22769573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 51775661 - 51775705
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51775661 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 51775705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 51790747 - 51790791
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51790747 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 51790791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 22490657 - 22490731
Alignment:
Q  141 gccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtc-agctataaaag 214  Q
    |||||||||| | |||||||| |||||||||||| |||||||||||||||| |||||| |||| |||||||||||    
T  22490657 gccgtgccatattttctccaggtccaggtgtccttttctcattggttcagaagcacacatgtcaagctataaaag 22490731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51775465 - 51775513
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  51775465 ttaatccttcaactttttaaaattgcatttaggtccaagttgtccaatt 51775513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51790551 - 51790599
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  51790551 ttaatccttcaactttttaaaattgcatttaggtccaagttgtccaatt 51790599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 26681374 - 26681322
Alignment:
Q  163 tccaggtgtcctgttctcattggttcagatgcacacttgtc-agctataaaag 214  Q
    |||||||||||| |||||||||||||||| ||| || |||| |||||||||||    
T  26681374 tccaggtgtccttttctcattggttcagaagcatacatgtcaagctataaaag 26681322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14415520 - 14415282
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  14415520 ttaatccttcaactttttaaatttgcatttaagtccaaactgtccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 14415421  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14415420 acaaaattgcagggaggtcctcaaagtccaaaattgcaaagccgtgccatttcctctccagatccaggtgtcctgttctcattggttcagatgcacactt 14415321  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14415320 gtcagctataaaagcaacacagtggcaatgaatttcaca 14415282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 16560015 - 16559894
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  16560015 ttaaaattgcatttaagtccaaattgtccaatttttat-attttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 16559917  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  16559916 gtcctcaaagtccaaaattacaa 16559894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 41784829 - 41784781
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcacaggtt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41784829 acacttgtcagctataaaagcaacacagtggcaatgaatttcacaggtt 41784781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 41800097 - 41800049
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcacaggtt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41800097 acacttgtcagctataaaagcaacacagtggcaatgaatttcacaggtt 41800049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 13768621 - 13768577
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13768621 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 13768577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 16559836 - 16559795
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16559836 acacttgtcagctataaaagcaacacagtggcaatgaatttc 16559795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 10933560 - 10933639
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||| ||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  10933560 caaagccgtgcctttttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 10933639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 10971357 - 10971436
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||| ||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  10971357 caaagccgtgcctttttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 10971436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31818020 - 31817785
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||| |||||||||||||||||||||||||    
T  31818020 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctattttttaaattgcagtccagtcccatatttt 31817921  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31817920 acaaaattgcagggaggtcctcaaagtccaaaactgcaaagccgtgccattttttctccagatccaggtgtcctgttctcattggttcagatgcacactt 31817821  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  31817820 gtcagctataaaagcaacacagtggcaatgaatttc 31817785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31833050 - 31832815
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||| |||||||||||||||||||||||||    
T  31833050 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctattttttaaattgcagtccagtcccatatttt 31832951  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31832950 acaaaattgcagggaggtcctcaaagtccaaaactgcaaagccgtgccattttttctccagatccaggtgtcctgttctcattggttcagatgcacactt 31832851  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  31832850 gtcagctataaaagcaacacagtggcaatgaatttc 31832815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28951329 - 28951091
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  28951329 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 28951230  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  28951229 acaaaattgcagggaggtcctcaaagtccaaaactgcaaagccgtgcctttttttttccagatccaggtgtcctgttctcattggttcagatgcacactt 28951130  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28951129 gtcagctataaaagcaacacagtggcaatgaatttcaca 28951091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28967553 - 28967315
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  28967553 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 28967454  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  28967453 acaaaattgcagggaggtcctcaaagtccaaaactgcaaagccgtgcctttttttttccagatccaggtgtcctgttctcattggttcagatgcacactt 28967354  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28967353 gtcagctataaaagcaacacagtggcaatgaatttcaca 28967315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 26488768 - 26489003
Alignment:
Q  3 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||    
T  26488768 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttt-agttctatttttaaaattgcagtccagtcccatattttac 26488866  T
Q  103 aagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgt 202  Q
    || |||||||||||||||||||||||||||| | ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  26488867 aaaattgcagggaggtcctcaaagtccaaaactgcaaggccgtgccattttttttccagatccaggtgtcctgttctcattggttcagatgcacacttgt 26488966  T
Q  203 cagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  26488967 cagctataaaagcaacacagtggcaatgaatttcaca 26489003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 26473719 - 26473955
Alignment:
Q  3 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||    
T  26473719 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttt-agttctatttttaaaattgcagtccagtcccatattttac 26473817  T
Q  103 aagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttct-ccagatccaggtgtcctgttctcattggttcagatgcacacttg 201  Q
    || |||||||||||||||||||||||||||| | ||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||    
T  26473818 aaaattgcagggaggtcctcaaagtccaaaactgcaaggccgtgccatttttttttccagatccaggtgtcctgttctcattggttcagatgcacacttg 26473917  T
Q  202 tcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26473918 tcagctataaaagcaacacagtggcaatgaatttcaca 26473955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 12125477 - 12125715
Alignment:
Q  3 aatccttcaactttttaaaa-ttgcatttaagtccaaactgtccaatttttatgnnnnnnn-agttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||    
T  12125477 aatccttcaactttttaaaaattgcatttaagtccaaactgtccaatctttatgttctttttagttctatttttaaaattgcagtccagtcccatatttt 12125576  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||| | ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  12125577 acaaaattgcagggaggtcctcaaagtccaaaactgcaaggccgtgccattttttttccagatccaggtgtcctgttctcattggttcagatgcacactt 12125676  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12125677 gtcagctataaaagcaacacagtggcaatgaatttcaca 12125715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 12140730 - 12140968
Alignment:
Q  3 aatccttcaactttttaaaa-ttgcatttaagtccaaactgtccaatttttatgnnnnnnn-agttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||    
T  12140730 aatccttcaactttttaaaaattgcatttaagtccaaactgtccaatctttatgttctttttagttctatttttaaaattgcagtccagtcccatatttt 12140829  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    |||| |||||||||||||||||||||||||||| | ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  12140830 acaaaattgcagggaggtcctcaaagtccaaaactgcaaggccgtgccattttttttccagatccaggtgtcctgttctcattggttcagatgcacactt 12140929  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12140930 gtcagctataaaagcaacacagtggcaatgaatttcaca 12140968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 9310775 - 9311012
Alignment:
Q  3 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnn-agttctatttttaaaattgcagtccagtcccatatttta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||    
T  9310775 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgttctttttagttctatttttaaaattgcagtccagtcccatatttta 9310874  T
Q  102 caagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttct--ccagatccaggtgtcctgttctcattggttcagatgcacact 199  Q
    ||| |||||||||||||||||||||||||||| | ||| |||||||||||| || |  ||||||||||||||||||||||||||||||||||||||||||    
T  9310875 caaaattgcagggaggtcctcaaagtccaaaactgcaaggccgtgccattttttttttccagatccaggtgtcctgttctcattggttcagatgcacact 9310974  T
Q  200 tgtcagctataaaagcaacacagtggcaatgaatttca 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9310975 tgtcagctataaaagcaacacagtggcaatgaatttca 9311012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 9326034 - 9326271
Alignment:
Q  3 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnn-agttctatttttaaaattgcagtccagtcccatatttta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||    
T  9326034 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgttctttttagttctatttttaaaattgcagtccagtcccatatttta 9326133  T
Q  102 caagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttct--ccagatccaggtgtcctgttctcattggttcagatgcacact 199  Q
    ||| |||||||||||||||||||||||||||| | ||| |||||||||||| || |  ||||||||||||||||||||||||||||||||||||||||||    
T  9326134 caaaattgcagggaggtcctcaaagtccaaaactgcaaggccgtgccattttttttttccagatccaggtgtcctgttctcattggttcagatgcacact 9326233  T
Q  200 tgtcagctataaaagcaacacagtggcaatgaatttca 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9326234 tgtcagctataaaagcaacacagtggcaatgaatttca 9326271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 27288697 - 27288555
Alignment:
Q  96 attttacaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgca 195  Q
    ||||| ||| ||||||||||||||||||| |||||||| | |||||||||||||||| |  | |||||||||||||||||||||||||||||||||||||    
T  27288697 atttttcaaaattgcagggaggtcctcaatgtccaaaactgcaaagccgtgccattt-tcatacagatccaggtgtcctgttctcattggttcagatgca 27288599  T
Q  196 cacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27288598 cacttgtcagctataaaagcaacacagtggcaatgaatttcaca 27288555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 32587853 - 32587720
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttt-tatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcaggga 115  Q
    ||||||||||||| ||||||||| ||||||||||| |||        |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  32587853 ttaaaattgcattcaagtccaaattgtccaattttatat---tttttagttctgtttttaaaattgcagtccagtcctatattttacaaaattgcaggga 32587757  T
Q  116 ggtcctcaaagtccaaaattacaaagccgtgccattt 152  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  32587756 ggtcctcaaggtccaaaattacaaggccgtgccattt 32587720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 32606282 - 32606149
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttt-tatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcaggga 115  Q
    ||||||||||||| ||||||||| ||||||||||| |||        |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  32606282 ttaaaattgcattcaagtccaaattgtccaattttatat---tttttagttctgtttttaaaattgcagtccagtcctatattttacaaaattgcaggga 32606186  T
Q  116 ggtcctcaaagtccaaaattacaaagccgtgccattt 152  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  32606185 ggtcctcaaggtccaaaattacaaggccgtgccattt 32606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 25639674 - 25639585
Alignment:
Q  63 agttctatttttaaaattgcagtccagtcccatattttacaagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccattt 152  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  25639674 agttctgtttttaaaattgcagtccagtcctatattttacaaaattgcagggaggtcctcaaggtccaaaattacaaggccgtgccattt 25639585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 18366964 - 18366876
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagcaacacagtggca 227  Q
    ||||||||||||||||| | || |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18366964 aagccgtgccatttcttttacaaatccaggtgtcctgttttcattggttcagatgtacacttgtcagctataaaagcaacacagtggca 18366876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 18382003 - 18381915
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagcaacacagtggca 227  Q
    ||||||||||||||||| | || |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18382003 aagccgtgccatttcttttacaaatccaggtgtcctgttttcattggttcagatgtacacttgtcagctataaaagcaacacagtggca 18381915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 15750511 - 15750393
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttat-------gnnnnnnnagttctatttttaaaattgcagtccagtccc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||| ||||||||||||||||||||||||    
T  15750511 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatttttttattttttttagttctgtttttaaaattgcagtccagtccc 15750412  T
Q  94 atattttacaagattgcag 112  Q
    ||||||||||| |||||||    
T  15750411 atattttacaaaattgcag 15750393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 15765739 - 15765621
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttat-------gnnnnnnnagttctatttttaaaattgcagtccagtccc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||| ||||||||||||||||||||||||    
T  15765739 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatttttttattttttttagttctgtttttaaaattgcagtccagtccc 15765640  T
Q  94 atattttacaagattgcag 112  Q
    ||||||||||| |||||||    
T  15765639 atattttacaaaattgcag 15765621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37209819 - 37209867
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37209819 ttaatccttcaactttttaaaattgcatttaagtccaaattgtccaatt 37209867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40465198 - 40465150
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40465198 ttaatccttcaactttttaaaattgcatttaagtccaaattgtccaatt 40465150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40480096 - 40480048
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40480096 ttaatccttcaactttttaaaattgcatttaagtccaaattgtccaatt 40480048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 3783069 - 3783113
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  3783069 acacttgtcagctataaaagcaacacagtgtcaatgaatttcaca 3783113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 3798424 - 3798468
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  3798424 acacttgtcagctataaaagcaacacagtgtcaatgaatttcaca 3798468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 18492162 - 18492082
Alignment:
Q  137 caaagccgtgccatttctt-ctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||| || |||||| |||||||||||| |||| ||||||||  ||| |||| |||||||||||||||||    
T  18492162 caaagccgtgccatttttttctccaggtccaggtgtccttttcttattggttccaatgtacacatgtcagctataaaagca 18492082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 18507477 - 18507397
Alignment:
Q  137 caaagccgtgccatttctt-ctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||| || |||||| |||||||||||| |||| ||||||||  ||| |||| |||||||||||||||||    
T  18507477 caaagccgtgccatttttttctccaggtccaggtgtccttttcttattggttccaatgtacacatgtcagctataaaagca 18507397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 26311440 - 26311202
Alignment:
Q  3 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnn-agttctatttttaaaattgcagtccagtcccatatttta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||    
T  26311440 aatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgttctttttagttctatttttaaaattgcagtccagtcccatatttta 26311341  T
Q  102 caagattgcagggaggtcctcaaagtccaaaattacaaagccgtgccatttcttctc-cagatccaggtgtcctgttctcattggttcagatgcacactt 200  Q
    ||| |||||||||||||||||||||||||||| | ||| |||||||||||| || |  ||||||||||||||||||||||||||||||||||||||||||    
T  26311340 caaaattgcagggaggtcctcaaagtccaaaactgcaaggccgtgccattttttttttcagatccaggtgtcctgttctcattggttcagatgcacactt 26311241  T
Q  201 gtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26311240 gtcagctataaaagcaacacagtggcaatgaatttcaca 26311202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 39994077 - 39993939
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  39994077 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatctttatgtttttttagttctatttttaaaattgcagtccagtcccatatttt 39993978  T
Q  101 acaagattgcagggaggtcctcaaagtccaaaattacaa 139  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  39993977 acaaaattgcagggaggtcctcaaagtccaaaattacaa 39993939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 2781904 - 2782025
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  2781904 ttaaaattgcatttaagtccaaattgtccaatttttat-attttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 2782002  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  2782003 gtcctcaaagtccaaaattacaa 2782025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 26428559 - 26428680
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  26428559 ttaaaattgcatttaagtccaaattgtccaatttttat-attttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 26428657  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  26428658 gtcctcaaagtccaaaattacaa 26428680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 26443997 - 26444118
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  26443997 ttaaaattgcatttaagtccaaattgtccaatttttat-attttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 26444095  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  26444096 gtcctcaaagtccaaaattacaa 26444118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 2769851 - 2769971
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  2769851 ttaaaattgcatttaagtccaaattgtccaatttttat-attttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgca-ggag 2769948  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  2769949 gtcctcaaagtccaaaattacaa 2769971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 3057964 - 3057870
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcag 112  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||    
T  3057964 ttaaaattgcatttaagtccaaattgtccaatttttat-actttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcag 3057870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 9613739 - 9613816
Alignment:
Q  139 aagccgtgccattt-cttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagc-tataaaag 214  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  9613739 aagccgtgccattttcttctccagatccaggtgtcctgttttcattggctcagatgcacacttggcagcatataaaag 9613816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 9841310 - 9841387
Alignment:
Q  139 aagccgtgccattt-cttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagc-tataaaag 214  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  9841310 aagccgtgccattttcttctccagatccaggtgtcctgttttcattggctcagatgcacacttggcagcatataaaag 9841387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 21996222 - 21996296
Alignment:
Q  141 gccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtc-agctataaaag 214  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||| |||| |||||||||||    
T  21996222 gccgtgccattttttctccaggtccaggtgtccttttctcattggttcagaagcacacatgtcaagctataaaag 21996296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 26695576 - 26695634
Alignment:
Q  181 attggttcagatgcacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||    
T  26695576 attggttccaatacacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 26695634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 2770029 - 2770073
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2770029 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 2770073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 2782083 - 2782127
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2782083 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 2782127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 26266285 - 26266241
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26266285 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 26266241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 26326317 - 26326273
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26326317 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 26326273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 26428738 - 26428779
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26428738 acacttgtcagctataaaagcaacacagtggcaatgaatttc 26428779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 26444176 - 26444217
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26444176 acacttgtcagctataaaagcaacacagtggcaatgaatttc 26444217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 10834544 - 10834467
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  10834544 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 10834467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 31081931 - 31081898
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtc 172  Q
    ||||||||||||||||||||||| ||||||||||    
T  31081931 aagccgtgccatttcttctccaggtccaggtgtc 31081898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 31093860 - 31093827
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtc 172  Q
    ||||||||||||||||||||||| ||||||||||    
T  31093860 aagccgtgccatttcttctccaggtccaggtgtc 31093827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 3780301 - 3780499
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  3780301 ttaaaattgcatttaagtccaaattgtccaatttttat-actttttagttctgtttttaaaattgcagtccagtcccatattttacaaaattgcagggag 3780399  T
Q  117 gtcctcaaagtccaaaattacaaagccgtgcca-tttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagc-tataaaag 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  3780400 gtcctcaaagtccaaaattacaaagccgtgccattttcttctccagatccaggtgtcctgttttcattggctcagatgcacacttggcagcatataaaag 3780499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 3792574 - 3792772
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  3792574 ttaaaattgcatttaagtccaaattgtccaatttttat-actttttagttctgtttttaaaattgcagtccagtcccatattttacaaaattgcagggag 3792672  T
Q  117 gtcctcaaagtccaaaattacaaagccgtgcca-tttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagc-tataaaag 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  3792673 gtcctcaaagtccaaaattacaaagccgtgccattttcttctccagatccaggtgtcctgttttcattggctcagatgcacacttggcagcatataaaag 3792772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 16861723 - 16861601
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  16861723 ttaaaattgcatttaagtccaaattgtccaatttttatatttttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 16861624  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  16861623 gtcctcaaagtccaaaattacaa 16861601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 27797111 - 27797232
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  27797111 ttaaaattgcatttaagtccaaattgtccaatttttat-attttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 27797209  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  27797210 gtcctcaaagtccaaaattacaa 27797232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 27812200 - 27812321
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  27812200 ttaaaattgcatttaagtccaaattgtccaatttttat-attttttagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 27812298  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  27812299 gtcctcaaagtccaaaattacaa 27812321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 39883628 - 39883717
Alignment:
Q  139 aagccgtgccattt-cttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagcaacacagtggca 227  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39883628 aagccgtgccattttcttctccaaatccaggtgtcctgttttcattggttcagatgtacacttgtcagctataaaagcaacacagtggca 39883717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 39899204 - 39899293
Alignment:
Q  139 aagccgtgccattt-cttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagcaacacagtggca 227  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39899204 aagccgtgccattttcttctccaaatccaggtgtcctgttttcattggttcagatgtacacttgtcagctataaaagcaacacagtggca 39899293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 10984829 - 10984917
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagcaacacagtggca 227  Q
    ||||||||||||||||| | || |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10984829 aagccgtgccatttcttttacaaatccaggtgtcctgttttcattggttcagatgtacacttgtcagctataaaagcaacacagtggca 10984917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 13928086 - 13928038
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcacaggtt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13928086 acacttgtcagctataaaagcaacacagtggcaatgaatttcagaggtt 13928038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 13943282 - 13943234
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcacaggtt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13943282 acacttgtcagctataaaagcaacacagtggcaatgaatttcagaggtt 13943234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27212845 - 27212893
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27212845 ttaatccttcaactttttaaaattgcatttaagtccaaattgtccaatt 27212893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 27797290 - 27797334
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27797290 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 27797334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 16861543 - 16861502
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16861543 acacttgtcagctataaaagcaacacagtggcaatgaatttc 16861502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 27812379 - 27812423
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  27812379 acacttgtcanctataaaagcaacacagtggcaatgaatttcaca 27812423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 2729836 - 2729913
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  2729836 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 2729913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25911210 - 25911161
Alignment:
Q  1 ttaatccttcaactttttaaa-attgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  25911210 ttaatccttcaactttttaaagattgcatttaagtccaaattgtccaatt 25911161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34152657 - 34152706
Alignment:
Q  1 ttaatccttcaactttttaaa-attgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  34152657 ttaatccttcaactttttaaagattgcatttaagtccaaattgtccaatt 34152706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34163513 - 34163562
Alignment:
Q  1 ttaatccttcaactttttaaa-attgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  34163513 ttaatccttcaactttttaaagattgcatttaagtccaaattgtccaatt 34163562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13928281 - 13928233
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  13928281 ttaatccttcaactttttaaaattgcatttaggtccaagttgtccaatt 13928233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13943477 - 13943429
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  13943477 ttaatccttcaactttttaaaattgcatttaggtccaagttgtccaatt 13943429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9341800 - 9341751
Alignment:
Q  1 ttaatccttcaactttttaaaa-ttgcatttaagtccaaactgtccaatt 49  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  9341800 ttaatccttcaactttttaaaaattgcgtttaagtccaaattgtccaatt 9341751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9356806 - 9356757
Alignment:
Q  1 ttaatccttcaactttttaaaa-ttgcatttaagtccaaactgtccaatt 49  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  9356806 ttaatccttcaactttttaaaaattgcgtttaagtccaaattgtccaatt 9356757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 37943534 - 37943497
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttat 54  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37943534 ttaaaattgcatttaagtccaaattgtccaatttttat 37943497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 5406121 - 5406000
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| |||||||||||| |        |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  5406121 ttaaaattgcatttaagtccaaattgtccaattttt-tatattttgagttctgtttttaaaattgcagtccagttccatattttacaaaattgcagggag 5406023  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    |||||||||||||||||||||||    
T  5406022 gtcctcaaagtccaaaattacaa 5406000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 14107192 - 14107307
Alignment:
Q  14 tttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaa---ttgcagtccagtcccatattttacaagattgc 110  Q
    |||||||||||||||||||||||||| ||||||||||||||        |||||| |||||||||   |||||||||||||||||||||||||| |||||    
T  14107192 tttttaaaattgcatttaagtccaaattgtccaatttttat--attttgagttctgtttttaaaaaaattgcagtccagtcccatattttacaaaattgc 14107289  T
Q  111 agggaggtcctcaaagtc 128  Q
    ||||||||||||||||||    
T  14107290 agggaggtcctcaaagtc 14107307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 14092090 - 14092206
Alignment:
Q  14 tttttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctattttt----aaaattgcagtccagtcccatattttacaagattg 109  Q
    |||||||||||||||||||||||||| ||||||||||||||        |||||| |||||    |||||||||||||||||||||||||||||| ||||    
T  14092090 tttttaaaattgcatttaagtccaaattgtccaatttttat--attttgagttctgttttttaaaaaaattgcagtccagtcccatattttacaaaattg 14092187  T
Q  110 cagggaggtcctcaaagtc 128  Q
    |||||||||||||||||||    
T  14092188 cagggaggtcctcaaagtc 14092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 4566010 - 4565966
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4566010 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 4565966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4566205 - 4566157
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  4566205 ttaatccttcaactttttaaaattgcatttaggtccaagttgtccaatt 4566157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 27620917 - 27620798
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| |||  |||||||||||||||| ||||||||||||| |||||||||||    
T  27620917 ttaaaattgcatttaagtccaaattgtccaatttttat-actttttagttctgttt--aaaattgcagtccagttccatattttacaaaattgcagggag 27620821  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    ||||||||||||| |||||||||    
T  27620820 gtcctcaaagtcctaaattacaa 27620798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 27636527 - 27636408
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcagggag 116  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| |||  |||||||||||||||| ||||||||||||| |||||||||||    
T  27636527 ttaaaattgcatttaagtccaaattgtccaatttttat-actttttagttctgttt--aaaattgcagtccagttccatattttacaaaattgcagggag 27636431  T
Q  117 gtcctcaaagtccaaaattacaa 139  Q
    ||||||||||||| |||||||||    
T  27636430 gtcctcaaagtcctaaattacaa 27636408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 28200952 - 28201063
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaa--ttgcagtccagtcccatattttacaagattgcaggg 114  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| |||||||||  |||||||||||||||||||||||||| |||||||||    
T  28200952 ttaaaattgcatttaagtccaaattgtccaatttttat--attttgagttctgtttttaaaaaattgcagtccagtcccatattttacaaaattgcaggg 28201049  T
Q  115 aggtcctcaaagtc 128  Q
    ||||||||||||||    
T  28201050 aggtcctcaaagtc 28201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 4766472 - 4766530
Alignment:
Q  181 attggttcagatgcacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4766472 attggttcagatgcacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 4766530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 4786691 - 4786633
Alignment:
Q  181 attggttcagatgcacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4786691 attggttcagatgcacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 4786633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 28216020 - 28216131
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaa--ttgcagtccagtcccatattttacaagattgcaggg 114  Q
    ||||||||||||||||||||||| ||||||||||||||        | |||| |||||||||  |||||||||||||||||||||||||| |||||||||    
T  28216020 ttaaaattgcatttaagtccaaattgtccaatttttat--attttgaattctgtttttaaaaaattgcagtccagtcccatattttacaaaattgcaggg 28216117  T
Q  115 aggtcctcaaagtc 128  Q
    ||||||||||||||    
T  28216118 aggtcctcaaagtc 28216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 16667554 - 16667633
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||| |||||||| |||||||||||| |||  ||||||||  |||||||| |||||||||||||||||    
T  16667554 caaagccgtgccattttttctccaggtccaggtgtccttttcctattggttccaatgcacacatgtcagctataaaagca 16667633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 16682836 - 16682915
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||| |||||||| |||||||||||| |||  ||||||||  |||||||| |||||||||||||||||    
T  16682836 caaagccgtgccattttttctccaggtccaggtgtccttttcctattggttccaatgcacacatgtcagctataaaagca 16682915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 33367478 - 33367420
Alignment:
Q  181 attggttcagatgcacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||    
T  33367478 attggttccaatacacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 33367420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 33378760 - 33378702
Alignment:
Q  181 attggttcagatgcacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||    
T  33378760 attggttccaatacacacttgtcagctataaaagcaacacagtggcaatgaatttcaca 33378702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 27620740 - 27620698
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttca 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27620740 acacttgtcagctataaaagcaacacagtggcaatgaatttca 27620698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 27636350 - 27636308
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttca 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27636350 acacttgtcagctataaaagcaacacagtggcaatgaatttca 27636308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24049487 - 24049439
Alignment:
Q  1 ttaatccttcaactttttaaaattgcatttaagtccaaactgtccaatt 49  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  24049487 ttaatccttcaactttttaaaactgcatttaagtccaaattgtccaatt 24049439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 27191149 - 27191226
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  27191149 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 27191226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 27203003 - 27203080
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  27203003 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 27203080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 27246229 - 27246152
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  27246229 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 27246152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 27258092 - 27258015
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  27258092 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 27258015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 2651664 - 2651590
Alignment:
Q  141 gccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtc-agctataaaag 214  Q
    |||||||||||| || ||||| ||||||||||   |||||||||||||||| |||||| |||| |||||||||||    
T  2651664 gccgtgccattttttttccaggtccaggtgtcactttctcattggttcagaagcacacatgtcaagctataaaag 2651590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 34456015 - 34455978
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttat 54  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  34456015 ttaaaattacatttaagtccaaattgtccaatttttat 34455978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 34470303 - 34470266
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttat 54  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  34470303 ttaaaattacatttaagtccaaattgtccaatttttat 34470266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 1450 - 1561
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaa--ttgcagtccagtcccatattttacaagattgcaggg 114  Q
    ||||||||||||||||||||||| ||||||||||||||        |||||| |||||||||  |||||||||||||||||||||||||| |||||||||    
T  1450 ttaaaattgcatttaagtccaaattgtccaatttttat--attttgagttctgtttttaaaaaattgcagtccagtcccatattttacaaaattgcaggg 1547  T
Q  115 aggtcctcaaagtc 128  Q
    ||||||||||||||    
T  1548 aggtcctcaaagtc 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 16518 - 16629
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttatgnnnnnnnagttctatttttaaaa--ttgcagtccagtcccatattttacaagattgcaggg 114  Q
    ||||||||||||||||||||||| ||||||||||||||        | |||| |||||||||  |||||||||||||||||||||||||| |||||||||    
T  16518 ttaaaattgcatttaagtccaaattgtccaatttttat--attttgaattctgtttttaaaaaattgcagtccagtcccatattttacaaaattgcaggg 16615  T
Q  115 aggtcctcaaagtc 128  Q
    ||||||||||||||    
T  16616 aggtcctcaaagtc 16629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 91275 - 91352
Alignment:
Q  139 aagccgtgccattt-cttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcag-ctataaaag 214  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||    
T  91275 aagccgtgccattttcctctccagatccaggtgtcctgttctcattggctcagatgcacacatggcagcctataaaag 91352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 13963 - 13919
Alignment:
Q  195 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13963 acacttgtcagctataaaagcaacacagtggcaatgaatttcaca 13919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14159 - 14110
Alignment:
Q  1 ttaatccttcaacttttt-aaaattgcatttaagtccaaactgtccaatt 49  Q
    |||||||||||||||||| ||||||||||||| ||||||  |||||||||    
T  14159 ttaatccttcaactttttaaaaattgcatttaggtccaagttgtccaatt 14110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 854 - 751
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttt-tatgnnnnnnnagttctatttttaaaattgcagtccagtcccatattttacaagattgcaggga 115  Q
    |||||||| |||||||||||||| ||||||||||| |||        |||||| |||||||||||||||||||||||| |||||||||| |||||||| |    
T  854 ttaaaattacatttaagtccaaattgtccaattttatat-tttttttagttctgtttttaaaattgcagtccagtcccttattttacaaaattgcaggaa 756  T
Q  116 ggtcc 120  Q
    |||||    
T  755 ggtcc 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 12621 - 12698
Alignment:
Q  139 aagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||| || | ||  |||||||||||| |||| ||||||||  |||||||| |||||||||||||||||    
T  12621 aagccgtgccattttttttacaagtccaggtgtccttttcttattggttccaatgcacacatgtcagctataaaagca 12698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 9941 - 9860
Alignment:
Q  137 caaagccgtgccatttctt--ctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcagctataaaagca 216  Q
    |||||||||||||||| ||  |||||| |||||||||||| |||| ||||||||  ||| |||| |||||| ||||||||||    
T  9941 caaagccgtgccattttttttctccaggtccaggtgtccttttcttattggttccaatgtacacatgtcagttataaaagca 9860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 22055 - 21987
Alignment:
Q  137 caaagccgtgccatttcttctccagatccaggtgtcctgttctcattggttcagatgcacacttgtcag 205  Q
    |||||||||||||||| || ||||  ||||| |||||| ||||||||||||||||  ||||| ||||||    
T  22055 caaagccgtgccattttttttccaagtccagttgtccttttctcattggttcagaatcacacatgtcag 21987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 2607 - 2659
Alignment:
Q  163 tccaggtgtcctgttctcattggttcagatgcacacttgtc-agctataaaag 214  Q
    |||||||||||| |||||||||||||||| |||||| |||| |||||||||||    
T  2607 tccaggtgtccttttctcattggttcagaagcacacatgtcaagctataaaag 2659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 14649 - 14686
Alignment:
Q  17 ttaaaattgcatttaagtccaaactgtccaatttttat 54  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  14649 ttaaaattacatttaagtccaaattgtccaatttttat 14686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University