View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3833_low_2 (Length: 492)
Name: NF3833_low_2
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3833_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 51376229 - 51376285
Alignment:
| Q |
426 |
tttccaatcctcttttagtcatttacataagtgttccttcaatacctattacctatg |
482 |
Q |
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| T |
51376229 |
tttccaatcctcttttattcatttacagaagtgttccttcaatacctattacctatg |
51376285 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 51821074 - 51821029
Alignment:
| Q |
363 |
caagagtcaaatttctttcatgatggaataaaggcttacctaaaag |
408 |
Q |
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| T |
51821074 |
caagagtcaattttctttcatgatataataaagacttacctaaaag |
51821029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 30643 - 30506
Alignment:
| Q |
61 |
tcctgcaaaccaacagtaaagcaatggctcgacaaaatatttgggaagccccccattcacaggacagaaaactttattagaattacattataagataact |
160 |
Q |
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| T |
30643 |
tcctgcaaaccaacagtgaagcaatggctctacaaatcattttgaaatttcc--agtcacaggacaaaaagctttattagaattacattgtaagacaact |
30546 |
T |
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| Q |
161 |
aaaactacaaacaagcataggctaaaggtttgttagaaccattc |
204 |
Q |
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| T |
30545 |
aatact----acaagcataagctaaagattagttagaaccattc |
30506 |
T |
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