View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3833_low_3 (Length: 460)
Name: NF3833_low_3
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3833_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 208 - 439
Target Start/End: Complemental strand, 10102543 - 10102311
Alignment:
| Q |
208 |
gcttgtaaaccttttcatcaacaccctttgtttgatgattcttatcatgatacttggaagaccccagtgaagttgatatgtccattccatggcttccagc |
307 |
Q |
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| T |
10102543 |
gcttgtaaaccttttcatcaacaccctttgtttgatgattcttatcatgatacttggaagaccccagtgaagttgatatgtccattccatggcttccagc |
10102444 |
T |
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| Q |
308 |
atagtaaatatttttcaatttcacaaaatcataaacctacatgtcaaaagagaaatgaatgtcatgtaaatactagactaaaatggaacaatgcaaagag |
407 |
Q |
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| T |
10102443 |
atagtaaatatttttcaatttcacaaaatcataaacctacatgtcaaaagagaaatgaatgtcatgtaaatactagactaaaaaggaacaatgcaaagag |
10102344 |
T |
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| Q |
408 |
cctaagaa-aaaaggatatctatatgattcagt |
439 |
Q |
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| T |
10102343 |
cctaagaaaaaaaggatatctatatgattcagt |
10102311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 10103051 - 10102969
Alignment:
| Q |
1 |
acctcttggatagttggtaaaaattcttctgctggatgataaagtacaacttcattaccctaaaatacattatgagacgttaa |
83 |
Q |
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| T |
10103051 |
acctcttggattgttggtaaaaattcttctgctggatgataaagtacaacttcattaccctaaaatacattatgagacgttaa |
10102969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 10102663 - 10102598
Alignment:
| Q |
87 |
ttatccttattgttatgtatgtctcaaacaagattgttctgataataagagaaatgtgaatttcat |
152 |
Q |
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| T |
10102663 |
ttattcttattgttatgtatgtctcaaacaagattgttatgataataagagaaatgtgaatttcat |
10102598 |
T |
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