View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3833_low_6 (Length: 387)

Name: NF3833_low_6
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3833_low_6
NF3833_low_6
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-362)||(374701-375048)
[»] chr1 (9 HSPs)
chr1 (20-362)||(40554252-40554591)
chr1 (13-161)||(48463137-48463284)
chr1 (13-200)||(48463627-48463809)
chr1 (31-162)||(20759675-20759807)
chr1 (102-162)||(20127118-20127177)
chr1 (229-278)||(31390384-31390433)
chr1 (102-162)||(6473821-6473880)
chr1 (102-162)||(22062190-22062249)
chr1 (171-199)||(31390467-31390495)
[»] chr4 (18 HSPs)
chr4 (13-362)||(11098850-11099195)
chr4 (171-362)||(42872573-42872763)
chr4 (171-371)||(18280860-18281059)
chr4 (226-362)||(21377600-21377736)
chr4 (43-162)||(19460339-19460458)
chr4 (62-162)||(19456507-19456607)
chr4 (43-154)||(19459921-19460032)
chr4 (52-162)||(24663403-24663513)
chr4 (43-150)||(19458224-19458331)
chr4 (98-162)||(19180479-19180543)
chr4 (102-162)||(15019328-15019387)
chr4 (52-161)||(22474285-22474395)
chr4 (102-162)||(9167232-9167291)
chr4 (229-329)||(9398802-9398902)
chr4 (102-162)||(15017688-15017747)
chr4 (102-162)||(39488195-39488254)
chr4 (171-200)||(9398741-9398770)
chr4 (102-162)||(34098767-34098825)
[»] chr2 (8 HSPs)
chr2 (31-362)||(44792812-44793140)
chr2 (13-329)||(18535273-18535585)
chr2 (31-329)||(24808125-24808422)
chr2 (31-329)||(24806269-24806566)
chr2 (23-141)||(31939075-31939195)
chr2 (102-162)||(6050268-6050327)
chr2 (102-162)||(15409846-15409905)
chr2 (171-200)||(22300001-22300030)
[»] scaffold0139 (2 HSPs)
scaffold0139 (31-371)||(6261-6598)
scaffold0139 (211-371)||(4595-4755)
[»] scaffold0180 (1 HSPs)
scaffold0180 (31-371)||(10778-11112)
[»] chr3 (6 HSPs)
chr3 (13-329)||(47417947-47418259)
chr3 (13-329)||(16347035-16347348)
chr3 (229-329)||(5553974-5554074)
chr3 (105-162)||(22271179-22271235)
chr3 (102-162)||(5553519-5553578)
chr3 (229-329)||(23460603-23460703)
[»] scaffold0025 (1 HSPs)
scaffold0025 (13-329)||(55258-55575)
[»] scaffold0013 (1 HSPs)
scaffold0013 (13-329)||(241447-241763)
[»] chr8 (10 HSPs)
chr8 (175-362)||(17857544-17857730)
chr8 (31-200)||(23015737-23015904)
chr8 (52-155)||(6777643-6777746)
chr8 (226-362)||(6777817-6777955)
chr8 (51-160)||(285364-285474)
chr8 (51-160)||(630403-630513)
chr8 (51-160)||(816215-816325)
chr8 (171-287)||(17277798-17277916)
chr8 (102-162)||(20730921-20730980)
chr8 (171-200)||(8366658-8366687)
[»] scaffold0018 (1 HSPs)
scaffold0018 (31-329)||(69-366)
[»] scaffold0146 (2 HSPs)
scaffold0146 (17-200)||(7698-7878)
scaffold0146 (171-329)||(27553-27712)
[»] scaffold0321 (1 HSPs)
scaffold0321 (210-361)||(5602-5753)
[»] scaffold0094 (1 HSPs)
scaffold0094 (229-362)||(13070-13203)
[»] scaffold0254 (1 HSPs)
scaffold0254 (31-162)||(24239-24371)
[»] chr6 (8 HSPs)
chr6 (31-162)||(2147775-2147907)
chr6 (102-162)||(30518330-30518389)
chr6 (105-162)||(6230684-6230740)
chr6 (102-162)||(18553384-18553443)
chr6 (102-162)||(18781800-18781859)
chr6 (102-162)||(20414951-20415010)
chr6 (102-162)||(20417598-20417657)
chr6 (102-162)||(20419684-20419743)
[»] chr5 (6 HSPs)
chr5 (226-362)||(16780994-16781130)
chr5 (102-162)||(244486-244545)
chr5 (102-162)||(4568298-4568357)
chr5 (102-162)||(29950164-29950223)
chr5 (171-200)||(38937027-38937056)
chr5 (102-162)||(29951802-29951861)
[»] scaffold0026 (1 HSPs)
scaffold0026 (229-334)||(86974-87079)
[»] chr7 (6 HSPs)
chr7 (229-329)||(41000261-41000361)
chr7 (102-162)||(9595482-9595541)
chr7 (102-162)||(9646445-9646504)
chr7 (102-162)||(32706386-32706445)
chr7 (98-162)||(12364323-12364387)
chr7 (171-200)||(41000202-41000231)
[»] scaffold0585 (1 HSPs)
scaffold0585 (101-162)||(917-977)
[»] scaffold0096 (1 HSPs)
scaffold0096 (102-162)||(22660-22719)
[»] scaffold0010 (1 HSPs)
scaffold0010 (102-162)||(136804-136863)
[»] scaffold0075 (1 HSPs)
scaffold0075 (102-161)||(25806-25864)
[»] scaffold0083 (2 HSPs)
scaffold0083 (171-200)||(35153-35182)
scaffold0083 (102-162)||(33265-33323)
[»] scaffold0076 (1 HSPs)
scaffold0076 (106-162)||(54818-54873)


Alignment Details
Target: scaffold0002 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 374701 - 375048
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  374701 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 374800  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgta-nnnnnnnnnat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||          ||    
T  374801 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc---aaaaggaagcaaagcttcacaacacacaaagtgtattttttttttat 374897  T
Q  212 caaaattctaccggttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataact 311  Q
    |||||||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  374898 caaaattctacttgttattcattattttcgccctctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataact 374997  T
Q  312 cttatgtggctaattattgcaaggaaatgttacaaatttattggttttgat 362  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  374998 tttatgtggctaattattgcaaggaaatgttacaaatttattggttttgat 375048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 40554591 - 40554252
Alignment:
Q  20 aataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  40554591 aataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaattcgatagaggatcgccacaagaaa 40554492  T
Q  120 cgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||         ||||||||||    
T  40554491 cgtggtttcttgataagatcaatgcatggttcaatccagaacc---acaaagaagcaaagcttcacaacacacaaagtgtatttttttttatcaaaattc 40554395  T
Q  220 taccggttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtg 319  Q
    ||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40554394 tacctcctattcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataactcttatgtg 40554295  T
Q  320 gctaattattgcaaggaaatgttacaaatttattggttttgat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40554294 gctaattattgcaaggaaatgttacaaatttattggttttgat 40554252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 48463284 - 48463137
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48463284 atacaataataaaaagtgaagaatggtggaaattgacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgtca 48463185  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaac 161  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||    
T  48463184 caagaaacgtggtttcttgataagatcaat-aatggttcaatccagaac 48463137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 48463627 - 48463809
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||    
T  48463627 atacaataataaaaaatgaagaatggtggaaatagagagaaatgataaccaaacaaattctcaatccaaggaagatatttaatttggtagaagatcgaca 48463726  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgta 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||         ||||||||||||||||||||||||||||||    
T  48463727 caagaaacgtggtttcttgataagatcaatg-atggttcaatcgagaac----aaaaagaagcaaagcttcacaacacacaaagtgta 48463809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 20759807 - 20759675
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||||| |||| || |||| ||||||| |||||||| ||||||||||||||  ||||||||||||||||| || ||| || |||| |    
T  20759807 aagaatgatggaaatagaccgaaaatggtaactaaacaaaatcccaatctaaggaagatgtttagcttggtagaggatcgccataaaaaatgtagttttt 20759708  T
Q  130 tgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||  ||||||| |||||| ||||    
T  20759707 tgataagatcaagtcatggtttaatccaaaacc 20759675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 20127177 - 20127118
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  20127177 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 20127118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 31390433 - 31390384
Alignment:
Q  229 ttcattatttttgccccctttatataggtaataggctagaatgctgaaaa 278  Q
    ||||||||||| |||||||||||||||| |||||||| | ||||||||||    
T  31390433 ttcattattttcgccccctttatataggaaataggctcggatgctgaaaa 31390384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 6473880 - 6473821
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    |||||||| ||||||||| ||| ||||||||||||||||| | ||| ||||||||||||||    
T  6473880 gaggatcgtcacaagaaatgtgatttcttgataagatcaa-ggatgattcaatccagaacc 6473821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 22062190 - 22062249
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  22062190 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 22062249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 31390495 - 31390467
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgt 199  Q
    |||||||||||||||||||||||||||||    
T  31390495 gaagcaaagcttcacaacacacaaagtgt 31390467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 11099195 - 11098850
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  11099195 atacaataacaaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattctcaatccaaggaagatgtttaatttggtaaaggattgcca 11099096  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||         |||    
T  11099095 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccaaaaa---gaagcaaagcttcacaacacacaaagtgtatttttttt-atc 11099000  T
Q  213 aaaattctaccggttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactc 312  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11098999 aaaattctacttgttattcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataactc 11098900  T
Q  313 ttatgtggctaattattgcaaggaaatgttacaaatttattggttttgat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098899 ttatgtggctaattattgcaaggaaatgttacaaatttattggttttgat 11098850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 171 - 362
Target Start/End: Original strand, 42872573 - 42872763
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggttattcattatttttgccccctttatataggtaataggctagaat 270  Q
    ||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  42872573 gaagcaaagcttcacaacacacaaagtgtatttttttt-atcaaaattctacctgttattcattattttcgccccctttatataggtaataggctagaat 42872671  T
Q  271 gctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattattgcaaggaaatgttacaaatttattggttttgat 362  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42872672 gctgaaaaacttacaattatatcaagattaatgaaataactcttatgtggctaattattgcaaggaaatgttacaaatttattggttttgat 42872763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 171 - 371
Target Start/End: Original strand, 18280860 - 18281059
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggttattcattatttttgccccctttatataggtaataggctagaat 270  Q
    ||||||||||||||||||||||||||||||         |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  18280860 gaagcaaagcttcacaacacacaaagtgtatttttttt-atcaaaattctacttgttattccttattttcgccccctttatataggtaataggatagaat 18280958  T
Q  271 gctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattattgcaaggaaatgttacaaatttattggttttgatggctgaat 370  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18280959 gctgaaaagcatacaattatatcaagattaatgaaataactcttatgtggctaattattgcaaggaaatgttacaaatttattggttttgatggctgaat 18281058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 226 - 362
Target Start/End: Complemental strand, 21377736 - 21377600
Alignment:
Q  226 ttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaat 325  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||    
T  21377736 ttattcattattttcgccccctttatataggtaatatgctagaatgctaaaaagcttacaattatatcatgattaatgaaataactcttatgtagctaat 21377637  T
Q  326 tattgcaaggaaatgttacaaatttattggttttgat 362  Q
    |||||||| ||||||||||||||||||||||||||||    
T  21377636 tattgcaatgaaatgttacaaatttattggttttgat 21377600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 19460339 - 19460458
Alignment:
Q  43 aatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaat 142  Q
    |||| ||| |||||| |||||||||||||| ||||| ||||||||||||||  |||||||||| ||| |||||||||| | ||||||||||||||||||     
T  19460339 aataaacataaatgaaaaccaaacaaattctcaatctaaggaagatgtttagcttggtagagggtcggcacaagaaacatagtttcttgataagatcaaa 19460438  T
Q  143 gcatggttcaatccagaacc 162  Q
     ||||||||||| |||||||    
T  19460439 acatggttcaattcagaacc 19460458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 19456607 - 19456507
Alignment:
Q  62 caaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaac 161  Q
    ||||||||||| ||||| ||| |||||||||| ||| |||||||||||||||||||||||  || ||||||||||||||| ||||| |||||||||||||    
T  19456607 caaacaaattctcaatctaagcaagatgtttagtttcgtagaggatcgccacaagaaacgaagtatcttgataagatcaaagcatgattcaatccagaac 19456508  T
Q  162 c 162  Q
    |    
T  19456507 c 19456507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 19460032 - 19459921
Alignment:
Q  43 aatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaat 142  Q
    ||||||||||||||   ||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||||| || |||||| ||||||||||     
T  19460032 aatagacagaaatggacaccaaacaaattctcaatccaaggtagatgtttagcttggtagaggatcgccacaagaaacatgctttctttataagatcaaa 19459933  T
Q  143 gcatggttcaat 154  Q
    |  |||||||||    
T  19459932 gtttggttcaat 19459921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 24663403 - 24663513
Alignment:
Q  52 aaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttc 151  Q
    ||||| ||||||||||||||  |||| |||||||||||| |   || ||||||||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  24663403 aaatggtaaccaaacaaattttcaattcaaggaagatgtattgcttcgtagaggatcgccacaagaaacgtggttttttgataagataaattcatggttc 24663502  T
Q  152 aatccagaacc 162  Q
    |||| ||||||    
T  24663503 aatctagaacc 24663513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 19458331 - 19458224
Alignment:
Q  43 aatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaat 142  Q
    ||||||||||||||  |||| |||||||||||||| |||||||||||||||  |||| | | ||||| |||||||||||  ||||||| ||||||||||     
T  19458331 aatagacagaaatggaaacccaacaaattcccaatacaaggaagatgtttagcttgggatacgatcgtcacaagaaacgaagtttctttataagatcaaa 19458232  T
Q  143 gcatggtt 150  Q
    ||||||||    
T  19458231 gcatggtt 19458224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 19180479 - 19180543
Alignment:
Q  98 ggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||    
T  19180479 ggtagaggatcgccacaagaaacgtggtttcttgataagatcaaaatttggtccaatccagaacc 19180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 15019328 - 15019387
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  15019328 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 15019387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 22474395 - 22474285
Alignment:
Q  52 aaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggat-cgccacaagaaacgtggtttcttgataagatcaatgcatggtt 150  Q
    |||||| || |||| ||||||| |||  ||||||| ||||||  || ||||||||| || ||||| ||||||| ||| ||||||| || || ||||||||    
T  22474395 aaatgaaaatcaaataaattcctaatttaaggaagttgtttagcttagtagaggattcgtcacaaaaaacgtgattttttgataaaattaaggcatggtt 22474296  T
Q  151 caatccagaac 161  Q
    |||||||||||    
T  22474295 caatccagaac 22474285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 9167291 - 9167232
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  9167291 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 9167232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 9398802 - 9398902
Alignment:
Q  229 ttcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattat 328  Q
    ||||||||||| ||||||| |||||||| ||||  || | |||||||||| |||||||| ||| || ||||| ||  ||||||| || ||||||| ||||    
T  9398802 ttcattattttcgccccctctatatagggaataaacttggatgctgaaaaacttacaatcatagcataattagtgctataactcctaggtggctagttat 9398901  T
Q  329 t 329  Q
    |    
T  9398902 t 9398902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 15017688 - 15017747
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||| ||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  15017688 gaggatcgccataagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 15017747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 39488195 - 39488254
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||| ||||||||||||||    
T  39488195 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatgattcaatccagaacc 39488254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 9398741 - 9398770
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgta 200  Q
    ||||||||||||||||||||||||||||||    
T  9398741 gaagcaaagcttcacaacacacaaagtgta 9398770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 34098825 - 34098767
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  |  ||||||||||||||||| | ||||||||||||||||||    
T  34098825 gaggatcgccacaagaaaa-taatttcttgataagatcaagg-atggttcaatccagaacc 34098767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 31 - 362
Target Start/End: Original strand, 44792812 - 44793140
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  44792812 aagaatgatggaaataggcagaaaatgataaccaaacaaattcccaatccaaggaagatgtttaattcgatagaggatcgccacaagaaacgtggtttct 44792911  T
Q  130 tgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggttat 229  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||         ||||||||||||||  ||||    
T  44792912 tgataagatcaatgcatggttcaatccagaaccacaaa---gaagcaaagcttcacaacacacaaagtgtatttttttt-atcaaaattctaccttttat 44793007  T
Q  230 tcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattatt 329  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44793008 tcattattttcgccccctttaaataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattatt 44793107  T
Q  330 gcaaggaaatgttacaaatttattggttttgat 362  Q
    |||||||||||||||||||||||||||||||||    
T  44793108 gcaaggaaatgttacaaatttattggttttgat 44793140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 18535273 - 18535585
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18535273 atacaataataaaatttgaagaatggtggaaatagacagaaatgataaccaaacaagttcccaatccaaggaagatgtttaatttggtagaggatcgcca 18535372  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatc 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||         |||    
T  18535373 caagaaacgtggtttcttgataagatcaatacatggttcaatccagaacc---aaaaagaagcaaagcttcacaacacacaaagtgta--tttttttatc 18535467  T
Q  213 aaaattctaccggt-tattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataact 311  Q
    ||||||||||  ||   ||||||||||| |||||||||||||||| |||||||| | ||||||||| ||||||||| ||| || ||||| ||  ||||||    
T  18535468 aaaattctacatgtcccttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataact 18535567  T
Q  312 cttatgtggctaattatt 329  Q
    | || ||||||| |||||    
T  18535568 cctaggtggctagttatt 18535585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 31 - 329
Target Start/End: Original strand, 24808125 - 24808422
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24808125 aagaatgatggaaataggcagaaaatggtaaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 24808224  T
Q  130 tgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggt--t 227  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||         |||||||||||||  ||       
T  24808225 tgataagatcaatgcatggttcaatccagaacc---aaaaagaagcaaagcttcacaacacacaaagtgta-ttttttttatcaaaattctacttgtccc 24808320  T
Q  228 attcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaatta 327  Q
     ||||||||||| |||||||||||||||| ||| |||| | ||||||||||||||||||| ||| || ||||| ||  ||||||| || ||||||| |||    
T  24808321 cttcattattttcgccccctttatataggaaatcggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggctagtta 24808420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 31 - 329
Target Start/End: Original strand, 24806269 - 24806566
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| || |||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  24806269 aagaatgatggaaataggcagaaaatggtaaccaaacaaatttccaatccaagaaagatgttta-tttggtagaggatcaccacaagaaacgtggtttct 24806367  T
Q  130 tgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggt--t 227  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||         |||||||||||||  ||       
T  24806368 tgataagatcaatgcatggttcaatccagaac---aaaaaagaagcaaagcttcacaacacacaaagtgtatttttttttatcaaaattctacttgtccc 24806464  T
Q  228 attcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaatta 327  Q
     ||||||||||| |||||||||||||||  |||||||| | ||||||||||||||||||| ||| || ||||| ||  ||||||| || ||||||| |||    
T  24806465 cttcattattttcgccccctttatatagaaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggctagtta 24806564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 31939195 - 31939075
Alignment:
Q  23 aaaaagtgaagaatggtggaaa-tagacagaaatgataaccaa-acaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaac 120  Q
    |||| |||||||| |||||||| |||||||||||| || | || |||| ||||||||  |||||||||| | || || ||||||||||||||||||||||    
T  31939195 aaaaggtgaagaacggtggaaaatagacagaaatggtagctaatacaatttcccaatttaaggaagatgatcaacttagtagaggatcgccacaagaaac 31939096  T
Q  121 gtggtttcttgataagatcaa 141  Q
     ||||||||||||||||||||    
T  31939095 atggtttcttgataagatcaa 31939075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 6050268 - 6050327
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  6050268 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 6050327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 15409905 - 15409846
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  15409905 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 15409846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 22300001 - 22300030
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgta 200  Q
    ||||||||||||||||||||||||||||||    
T  22300001 gaagcaaagcttcacaacacacaaagtgta 22300030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 31 - 371
Target Start/End: Complemental strand, 6598 - 6261
Alignment:
Q  31 aagaatggtggaaatagacagaaat-gataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6598 aagaatgatggaaataggcagaaattggtaaccaaacaaattcccaatccaaagaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 6499  T
Q  130 tgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggttat 229  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||         |||||||||||||   ||||    
T  6498 tgataagatcaatgcatggttcaatccagaaccaaaaa---gaagcaaagcttcacatcacacaaagtgtatttttttt-atcaaaattctacttcttat 6403  T
Q  230 tcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattatt 329  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  6402 tcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacagttatatcaagattaatgaaataactcttatgtggctaattatt 6303  T
Q  330 gcaaggaaatgttacaaatttattggttttgatggctgaatc 371  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  6302 gtaaggaaatgttacaaatttattggttttgatggctgaatc 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 211 - 371
Target Start/End: Complemental strand, 4755 - 4595
Alignment:
Q  211 tcaaaattctaccggttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataac 310  Q
    ||||||||||||   || ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  4755 tcaaaattctacttcttgttcattattttcgccccctttatataggtactaggctagaatgctgaaaagcttacagttatatcaagattaatgaaataac 4656  T
Q  311 tcttatgtggctaattattgcaaggaaatgttacaaatttattggttttgatggctgaatc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4655 tcttatgtggctaattattgcaaggaaatgttacaaatttattggttttgatggctgaatc 4595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 31 - 371
Target Start/End: Original strand, 10778 - 11112
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10778 aagaatgatggaaataggcagaaaatggtaaccaaacaaattcccaattcaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 10877  T
Q  130 tgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggttat 229  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||||         |||||||||||||   | ||    
T  10878 tgataagatcaatgcatggttcaatccagaaccaaaaaa--gaagcaaagcttcacaacacgcaaagtgtattttttttaatcaaaattctacttatcat 10975  T
Q  230 tcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattatt 329  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||    
T  10976 tcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagatt-----aataactcttatgtggctaattatt 11070  T
Q  330 gcaaggaaatgttacaaatttattggttttgatggctgaatc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11071 gcaaggaaatgttacaaatttattggttttgatggctgaatc 11112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 47417947 - 47418259
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47417947 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 47418046  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||         |||    
T  47418047 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc---aaaaagaagcaaagcttcacaacacacaaagtgta--tttttttatc 47418141  T
Q  213 aaaattctaccggt-tattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataact 311  Q
    ||||||||||| ||   ||||||||||| |||||||||||||||| |||||||| | ||||||||| ||||||||| ||| || ||||| ||  ||||||    
T  47418142 aaaattctacctgtcccttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataact 47418241  T
Q  312 cttatgtggctaattatt 329  Q
    | || ||||||| |||||    
T  47418242 cctaggtggctagttatt 47418259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 16347348 - 16347035
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16347348 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaagttcccaatccaaggaagatgtttaatttggtagaggatcgcca 16347249  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||         |||    
T  16347248 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc---aaaaagaagcaaagtttcacaacacacaaagtgta-ttttttttatc 16347153  T
Q  213 aaaattctaccggt-tattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataact 311  Q
    ||||||||||  ||   ||||||||||| |||||||||||||||| |||||||| | ||||||||| ||||||||| ||| || ||||| ||  ||||||    
T  16347152 aaaattctacttgtcccttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataact 16347053  T
Q  312 cttatgtggctaattatt 329  Q
    | || ||||||| |||||    
T  16347052 cctaggtggctagttatt 16347035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 5553974 - 5554074
Alignment:
Q  229 ttcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattat 328  Q
    ||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||| ||| || ||||| ||  ||||||| || || |||| ||||    
T  5553974 ttcattattttcgccccctttatataggaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggttgctagttat 5554073  T
Q  329 t 329  Q
    |    
T  5554074 t 5554074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 22271235 - 22271179
Alignment:
Q  105 gatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  22271235 gatcgccacaagaaatgtgatttcttgataagatcaatg-atggttcaatccagaacc 22271179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 5553578 - 5553519
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||||| ||||||||||||||||||    
T  5553578 gaggatcgccacaagaaatatgatttcttgataagatcaatg-atggttcaatccagaacc 5553519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 23460703 - 23460603
Alignment:
Q  229 ttcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattat 328  Q
    ||||||||||| ||||||||| |||||| |||||||| | | |||||||| |||||||| ||| || ||||| ||  |||| || || ||||||| ||||    
T  23460703 ttcattattttcgccccctttttataggaaataggcttggaagctgaaaaacttacaatcatagcataattagtgttataattcctaggtggctagttat 23460604  T
Q  329 t 329  Q
    |    
T  23460603 t 23460603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 55575 - 55258
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55575 atacaataataaaaagtgaagaatggtggaaatagaaagaaatgataaccaaacaagttcccaatccaaggaagatgtttaatttggtagaggatcgcca 55476  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgta-nnnnnnnnnat 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||          ||    
T  55475 caagaaacgtggtttcttgatgagatcaatgcatggttcaatccagaacc---aaaaagaagcaaagcttcacaacacacaaagtgtattttttttttat 55379  T
Q  212 caaaattctaccggt--tattcatt-atttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaata 308  Q
    |||||||||||  ||  | |||||| ||||| |||||||||||||||| |||||||| | ||||||||||||||||||| ||| || ||||| ||  |||    
T  55378 caaaattctacttgtgctcttcattaattttcgccccctttatataggaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttata 55279  T
Q  309 actcttatgtggctaattatt 329  Q
    |||| || |||| || |||||    
T  55278 actcctaggtggttagttatt 55258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 241763 - 241447
Alignment:
Q  13 atacaataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  241763 atacaataataaaaagtgaagaatggtggaaatagacagaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcacca 241665  T
Q  113 caagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgta--nnnnnnnnna 210  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||           |    
T  241664 caagaaacgtggtttcttgataagatcaacgcatggttcaatccagaacc---aaaaagaagcaaagcttcacaacacacaaagtgtattttttttttta 241568  T
Q  211 tcaaaattctaccgg--ttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaata 308  Q
    ||||||||||||  |  |  ||||||||||| ||||||| |||||||| |||||||| | ||||||||||||||||||| ||| || ||||| ||  |||    
T  241567 tcaaaattctacttgtctccttcattattttcgccccctatatataggaaataggcttggatgctgaaaagcttacaatcatagcataattagtgttata 241468  T
Q  309 actcttatgtggctaattatt 329  Q
    |||| || ||||||| |||||    
T  241467 actcctaggtggctagttatt 241447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 175 - 362
Target Start/End: Complemental strand, 17857730 - 17857544
Alignment:
Q  175 caaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggttattcattatttttgccccctttatataggtaataggctagaatgctg 274  Q
    ||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17857730 caaagcttcacaacacacaaagtgtattttttta-atcaaaattctacctgttattcattatttttgccccctttatataggtaataggctagaatgctg 17857632  T
Q  275 aaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattattgcaaggaaatgttacaaatttattggttttgat 362  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17857631 aaaagcttagaattatatcaagattaatgaaataactcttatgtggctaattattgcaagaaaatgttacaaatttattggttttgat 17857544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 23015737 - 23015904
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23015737 aagaatgatggaaataggcagaaaatggtaaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 23015836  T
Q  130 tgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgta 200  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  23015837 tgataagatcaatgcatggttcaatccagaacc---aaaaagaagcaaagcttcacaacacacaaagtgta 23015904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 6777643 - 6777746
Alignment:
Q  52 aaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttc 151  Q
    ||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||    
T  6777643 aaatggtaaccaaacaaattctcaatccaaggaagttgtttagtttggtagaggatcgccacaagaaacgtggtttcttgataagattaagtcatgattc 6777742  T
Q  152 aatc 155  Q
    ||||    
T  6777743 aatc 6777746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 362
Target Start/End: Original strand, 6777817 - 6777955
Alignment:
Q  226 ttattcattatttttgccccctttatataggtaataggc-tagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaa 324  Q
    |||||||||||||| ||||||||||||||   ||||||| ||||||||||||||||||||  | ||| ||  |||||| |||||||| | ||| || |||    
T  6777817 ttattcattattttcgccccctttatataaaaaataggcttagaatgctgaaaagcttacggtcatagcatgattaataaaataactttgatggggttaa 6777916  T
Q  325 ttattgc-aaggaaatgttacaaatttattggttttgat 362  Q
    ||||||| ||| ||| |||||| ||| ||||||||||||    
T  6777917 ttattgcaaagaaaaggttacagattaattggttttgat 6777955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 285364 - 285474
Alignment:
Q  51 gaaatgataaccaa-acaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggt 149  Q
    ||||||| |||||| |||||||| |||||||||||| ||| | |  |||||||||||||| || ||||||| | |||| |||||||||||||  |||| |    
T  285364 gaaatgaaaaccaacacaaattctcaatccaaggaatatgataagcttggtagaggatcgtcataagaaacattgttttttgataagatcaaaacatgat 285463  T
Q  150 tcaatccagaa 160  Q
    |||||| ||||    
T  285464 tcaatctagaa 285474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 630513 - 630403
Alignment:
Q  51 gaaatgataaccaa-acaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggt 149  Q
    ||||||| |||||| |||||||| |||||||||||| ||| | |  |||||||||||||| || ||||||| | |||| |||||||||||||  |||| |    
T  630513 gaaatgaaaaccaacacaaattctcaatccaaggaatatgataagcttggtagaggatcgtcataagaaacattgttttttgataagatcaaaacatgat 630414  T
Q  150 tcaatccagaa 160  Q
    |||||| ||||    
T  630413 tcaatctagaa 630403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 816325 - 816215
Alignment:
Q  51 gaaatgataaccaa-acaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggt 149  Q
    ||||||| |||||| |||||||| |||||||||||| ||| | |  |||||||||||||| || ||||||| | |||| |||||||||||||  |||| |    
T  816325 gaaatgaaaaccaacacaaattctcaatccaaggaatatgataagcttggtagaggatcgtcataagaaacattgttttttgataagatcaaaacatgat 816226  T
Q  150 tcaatccagaa 160  Q
    |||||| ||||    
T  816225 tcaatctagaa 816215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 17277798 - 17277916
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggtta--ttcattatttttgccccctttatataggtaataggctaga 268  Q
    ||||||||||||||||||||||||||||||         |||||||||| ||  ||    ||||||||||  |||||||||||||||| ||||  || ||    
T  17277798 gaagcaaagcttcacaacacacaaagtgtatttttttttatcaaaattcaacttgtccccttcattatttccgccccctttatataggaaataaacttga 17277897  T
Q  269 atgctgaaaagcttacaat 287  Q
    ||||| |||||||||||||    
T  17277898 atgctaaaaagcttacaat 17277916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 20730980 - 20730921
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  20730980 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 20730921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 8366687 - 8366658
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgta 200  Q
    ||||||||||||||||||||||||||||||    
T  8366687 gaagcaaagcttcacaacacacaaagtgta 8366658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 31 - 329
Target Start/End: Original strand, 69 - 366
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69 aagaatgatggaaataggcagaaaatggtaaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 168  T
Q  130 tgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggt--t 227  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||         |||||||||||||  ||       
T  169 tgataagatcaatgcatggttcaatccagaacc---aaaaagaagcaaagcttcacaacacacaaagtgta-ttttttttatcaaaattctacttgtccc 264  T
Q  228 attcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaatta 327  Q
     ||||||||||| |||||||||||||||| ||| |||| | ||||||||||||||||||| ||| || ||||| ||  ||||||| || ||||||| |||    
T  265 cttcattattttcgccccctttatataggaaatcggcttggatgctgaaaagcttacaatcatagcataattagtgttataactcctaggtggctagtta 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 7878 - 7698
Alignment:
Q  17 aataataaaaagtgaagaatggtggaaatagacagaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaag 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7878 aataataaaaagtgaagaatggtggaaatagacaaaaatgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatctccacaag 7779  T
Q  117 aaacgtggtttcttgataagatcaatgcatggttcaatccagaaccnnnnnnnngaagcaaagcttcacaacacacaaagtgta 200  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||        |||||||| |||||||||||||||||||||    
T  7778 aaacgtggtttcttgataagatcaatccatggtccaatccagaacc---aaaaagaagcaaaacttcacaacacacaaagtgta 7698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 27712 - 27553
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgtannnnnnnnnatcaaaattctaccggtta-ttcattatttttgccccctttatataggtaataggctagaa 269  Q
    ||||||||||||||||||||||||||||||         |||||||||||||  ||   ||||||||||| |||||||||||||||| |||||||| | |    
T  27712 gaagcaaagcttcacaacacacaaagtgtatttttttttatcaaaattctacttgtcccttcattattttcgccccctttatataggaaataggcttgga 27613  T
Q  270 tgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattatt 329  Q
    |||||||| ||||||||| ||| || ||||| ||  ||||||| || ||||||| |||||    
T  27612 tgctgaaatgcttacaatcataacataattagtgttataactcctaggtggctagttatt 27553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 210 - 361
Target Start/End: Complemental strand, 5753 - 5602
Alignment:
Q  210 atcaaaattctaccggttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataa 309  Q
    |||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5753 atcaaaattctacttattattcattattttcgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaagattaatgaaataa 5654  T
Q  310 ctcttatgtggctaattattgcaaggaaatgttacaaatttattggttttga 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5653 ctcttatgtggctaattattgcaaggaaatgttacaaatttattggttttga 5602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 229 - 362
Target Start/End: Original strand, 13070 - 13203
Alignment:
Q  229 ttcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattat 328  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  13070 ttcattattttcgccccctttatataggtaataggctagaatgttgaaaagcttacaattatatcatgattaatgaaataactcttatgtggctaattat 13169  T
Q  329 tgcaaggaaatgttacaaatttattggttttgat 362  Q
    ||||||||||||||||||||||||||||||||||    
T  13170 tgcaaggaaatgttacaaatttattggttttgat 13203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 24239 - 24371
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24239 aagaatgatggaaataggcagaaaatggtaaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 24338  T
Q  130 tgataagatcaatgcatggttcaatccagaacc 162  Q
    |||||||||||||||||||||||||||||||||    
T  24339 tgataagatcaatgcatggttcaatccagaacc 24371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 2147775 - 2147907
Alignment:
Q  31 aagaatggtggaaatagacagaaa-tgataaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 129  Q
    ||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2147775 aagaatgatggaaataggcagaaaatggtaaccaaacaaattcccaatccaaggaagatgtttaatttggtagaggatcgccacaagaaacgtggtttct 2147874  T
Q  130 tgataagatcaatgcatggttcaatccagaacc 162  Q
    |||||||||||||||||||||||||||||||||    
T  2147875 tgataagatcaatgcatggttcaatccagaacc 2147907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 30518330 - 30518389
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  30518330 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 30518389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 6230684 - 6230740
Alignment:
Q  105 gatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    |||||||| |||||| ||| ||||||||||||||||| | ||||||||||||||||||    
T  6230684 gatcgccataagaaatgtgatttcttgataagatcaa-ggatggttcaatccagaacc 6230740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 18553443 - 18553384
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  18553443 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 18553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 18781859 - 18781800
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  18781859 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 18781800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 20414951 - 20415010
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  20414951 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 20415010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 20417598 - 20417657
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  20417598 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 20417657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 20419684 - 20419743
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  20419684 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 20419743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 226 - 362
Target Start/End: Complemental strand, 16781130 - 16780994
Alignment:
Q  226 ttattcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaat 325  Q
    |||||||||||||| | | | |||||||||  ||||||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  16781130 ttattcattattttcgtctcatttatatagaaaataggctagagtgctgaaaatcttacaattatatcatgattaatgaaataactcttatgtggctaat 16781031  T
Q  326 tattgcaaggaaatgttacaaatttattggttttgat 362  Q
    |||| |||| ||| |||||||||| ||||||||||||    
T  16781030 tattacaagaaaaggttacaaattaattggttttgat 16780994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 244486 - 244545
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  244486 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 244545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 4568357 - 4568298
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||| ||||||||||||| | ||||||||||||||||||    
T  4568357 gaggatcgccacaagaaatatgattttttgataagatcaa-gaatggttcaatccagaacc 4568298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 29950223 - 29950164
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  29950223 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 29950164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 38937027 - 38937056
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgta 200  Q
    ||||||||||||||||||||||||||||||    
T  38937027 gaagcaaagcttcacaacacacaaagtgta 38937056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 29951861 - 29951802
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||| ||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  29951861 gaggatcaccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 29951802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 87079 - 86974
Alignment:
Q  229 ttcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattat 328  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||| |||  | ||||| ||  ||||||| || ||||||| ||||    
T  87079 ttcattattttcgccccctttatataggaaataggctaggatgctaaaaagcttacaatcatagtataattagtgttataactcctaggtggctagttat 86980  T
Q  329 tgcaag 334  Q
    | ||||    
T  86979 tacaag 86974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 41000261 - 41000361
Alignment:
Q  229 ttcattatttttgccccctttatataggtaataggctagaatgctgaaaagcttacaattatatcaaaattaatgaaataactcttatgtggctaattat 328  Q
    ||||||||||| |||||||||||||||| |||||||| | ||||||||| ||||||||| ||| || ||||| ||  ||||||| || ||||||| ||||    
T  41000261 ttcattattttcgccccctttatataggaaataggcttggatgctgaaatgcttacaatcataacataattagtgttataactcctaggtggctagttat 41000360  T
Q  329 t 329  Q
    |    
T  41000361 t 41000361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 9595482 - 9595541
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  9595482 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 9595541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 9646445 - 9646504
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  9646445 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 9646504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 32706445 - 32706386
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    |||||| ||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||    
T  32706445 gaggattgccacaagaaatgtgatttcttgataagatcaa-ggatggttcaatccagaacc 32706386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 12364323 - 12364387
Alignment:
Q  98 ggtagaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||    |||| ||||||||||||    
T  12364323 ggtaaaggatcgccacaagaaacgcggttttttgataagatcaaaatttggtccaatccagaacc 12364387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 41000202 - 41000231
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgta 200  Q
    ||||||||||||||||||||||||||||||    
T  41000202 gaagcaaagcttcacaacacacaaagtgta 41000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 917 - 977
Alignment:
Q  101 agaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    |||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  917 agaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 22660 - 22719
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  22660 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacc 22719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 136863 - 136804
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||| |||||||||||    
T  136863 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggtttaatccagaacc 136804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 25806 - 25864
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaac 161  Q
    ||||||||||||||||||  || ||||||||||||||||| |  ||||||||||||||||    
T  25806 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaac 25864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 35153 - 35182
Alignment:
Q  171 gaagcaaagcttcacaacacacaaagtgta 200  Q
    ||||||||||||||||||||||||||||||    
T  35153 gaagcaaagcttcacaacacacaaagtgta 35182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 33323 - 33265
Alignment:
Q  102 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||||||  |  ||||||||||||||||| | ||||||||||||||||||    
T  33323 gaggatcgccacaagaaaa-taatttcttgataagatcaagg-atggttcaatccagaacc 33265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 54873 - 54818
Alignment:
Q  106 atcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacc 162  Q
    ||||||||||||||  || ||||||||||||||||| |  |||||||||||||||||    
T  54873 atcgccacaagaaatatgatttcttgataagatcaa-ggttggttcaatccagaacc 54818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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