View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3833_low_8 (Length: 361)

Name: NF3833_low_8
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3833_low_8
NF3833_low_8
[»] chr2 (19 HSPs)
chr2 (1-344)||(44615391-44615739)
chr2 (120-337)||(44624774-44624988)
chr2 (20-342)||(39153046-39153356)
chr2 (29-329)||(39216657-39216945)
chr2 (132-334)||(39205730-39205929)
chr2 (144-337)||(39196510-39196700)
chr2 (146-331)||(39371115-39371297)
chr2 (144-330)||(39387494-39387677)
chr2 (141-343)||(39138632-39138828)
chr2 (46-330)||(39396563-39396835)
chr2 (218-337)||(39421257-39421373)
chr2 (141-250)||(39472761-39472870)
chr2 (170-337)||(44895133-44895297)
chr2 (63-274)||(39412957-39413159)
chr2 (146-337)||(39380496-39380684)
chr2 (144-325)||(39223715-39223893)
chr2 (8-51)||(44749560-44749603)
chr2 (261-332)||(39099584-39099652)
chr2 (194-247)||(39188804-39188857)
[»] chr8 (3 HSPs)
chr8 (30-287)||(44730154-44730402)
chr8 (30-286)||(44949787-44950037)
chr8 (141-337)||(45342957-45343150)
[»] chr5 (2 HSPs)
chr5 (120-330)||(17060645-17060852)
chr5 (144-337)||(33562281-33562471)
[»] scaffold0283 (1 HSPs)
scaffold0283 (30-286)||(5767-6017)
[»] chr7 (1 HSPs)
chr7 (141-332)||(19808900-19809085)
[»] chr6 (1 HSPs)
chr6 (216-337)||(16114359-16114477)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 44615739 - 44615391
Alignment:
Q  1 acaataagagaaatattggtgaccga-----ctaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcaca 95  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  44615739 acaataagagaaatattggtgaccgaaccgactaaagaatttctaaatcaacataccagagactttatttgcaaaacccagtgtcctacacagcttcaca 44615640  T
Q  96 gctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaata 195  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615639 gctatcttgtattcagcagcagacgcaacataagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaata 44615540  T
Q  196 gaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615539 gaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaat 44615440  T
Q  296 aatatttggtgagattatcatcagttgttctagcagatagatccagcct 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615439 aatatttggtgagattatcatcagttgttctagcagatagatccagcct 44615391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 120 - 337
Target Start/End: Complemental strand, 44624988 - 44624774
Alignment:
Q  120 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 219  Q
    ||||||||  |||||| |||  ||||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||| |||    
T  44624988 gcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataat 44624889  T
Q  220 tttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcag 319  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||   ||||||||||||||||| |||||||    
T  44624888 tttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtt---taatatttggtgagattgtcatcag 44624792  T
Q  320 ttgttctagcagatagat 337  Q
    || |||||||||||||||    
T  44624791 tttttctagcagatagat 44624774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 39153356 - 39153046
Alignment:
Q  20 tgaccgactaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagac 119  Q
    |||| ||| |||| || ||||||| ||||||| ||| ||||||||||||||||||||||||| | | || | ||||||  |||||| || ||||          
T  39153356 tgactgaccaaagcatgtctaaattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtgttgagca------ 39153263  T
Q  120 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 219  Q
       ||| | ||||||| ||  ||||||||||||| ||| ||  || |||||||||| |||||||| |||| || |||||| |||||| || |||||||||    
T  39153262 ---acaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaat 39153166  T
Q  220 tttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcag 319  Q
    |||| ||||||||||| || ||||||||||| |||   || || ||||| ||||| ||||||||||||| ||   |||| || ||||||||| |||||||    
T  39153165 tttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtt---taatcttcggtgagattctcatcag 39153069  T
Q  320 ttgttctagcagatagatccagc 342  Q
    ||||||||||||| |||| ||||    
T  39153068 ttgttctagcagaaagatgcagc 39153046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 329
Target Start/End: Complemental strand, 39216945 - 39216657
Alignment:
Q  29 aaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaa 128  Q
    |||| |||||||||| ||||||| ||| ||||||||||||||||||||||||  | |||| |  | |||||||||||        || || ||||||||     
T  39216945 aaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgt--------gctga-gcaacagat 39216855  T
Q  129 gcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtat 228  Q
    ||||||| ||  || |||||||||||| ||||  || |||||||||| ||||| || |||| ||  ||||| || ||| || ||||||||||||  ||||    
T  39216854 gcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtat 39216755  T
Q  229 tttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctag 328  Q
    ||||  ||||||||| |||||| ||| | ||||||||||| ||||| ||||||||||||| |||||||  |   ||||||||| ||||||||||||||||    
T  39216754 tttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatga---ggtgagattttcatcagttgttctag 39216658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 334
Target Start/End: Original strand, 39205730 - 39205929
Alignment:
Q  132 aaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatttt 231  Q
    ||||||| ||| |||||||||| ||||||  ||| || ||||   |||||||| |||| || |||||| |||||| || ||| ||||||||| |||||||    
T  39205730 aaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtatttt 39205829  T
Q  232 ctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcag 331  Q
    ||||||| ||||||||||| ||| | ||||||||||| ||||  ||||| ||||||| || |||||    |||||||||| ||||||||||||| |||||    
T  39205830 ctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataa---ctggtgagattctcatcagttgttcaagcag 39205926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 337
Target Start/End: Original strand, 39196510 - 39196700
Alignment:
Q  144 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 243  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||||||||||| ||||| || ||||||||||    
T  39196510 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttag 39196609  T
Q  244 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 337  Q
    ||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||   |||||| |||||||||| ||||||||||||| |||||||||||    
T  39196610 ctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---taatatctggtgagattctcatcagttgttccagcagatagat 39196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 146 - 331
Target Start/End: Complemental strand, 39371297 - 39371115
Alignment:
Q  146 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 245  Q
    |||||||||||||||  || |||||||||| ||| | || |||| ||||||||| |||||| || |||||| |||||   |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  246 ttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcag 331  Q
    ||||  |||   ||||||||||| |||||||||||||||||||  |    |||||||||||||||| |||| ||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctcttacacaaggct---caatatttggtgagattttcataagttgttctagcag 39371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 39387494 - 39387677
Alignment:
Q  144 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 243  Q
    ||||||||||| ||||| |||| || ||  || ||||| || |||| ||  ||||| |||||| |  ||||||||||||| |||||||||||||||||||    
T  39387494 acttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttag 39387593  T
Q  244 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagca 330  Q
    |||| || |||| |||||||||||| ||||| | | ||||||||| ||    ||| ||||||||| || ||||||||||||||||||    
T  39387594 cttttaaatcacgcgctagcttcaatgcttctttttttacacaagttt---caatttttggtgaggttctcatcagttgttctagca 39387677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 343
Target Start/End: Complemental strand, 39138828 - 39138632
Alignment:
Q  141 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 240  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || ||||||| |||||| || ||| || ||| ||||||||| |||||   ||||||||    
T  39138828 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgt 39138732  T
Q  241 tagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagatcca 340  Q
    |||||||||  | |   ||||||||||| ||||| |||||||||  || ||   |||| || ||||||||| |||||||||||||||||||| |||| ||    
T  39138731 tagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtt---taatcttcggtgagattctcatcagttgttctagcagaaagatgca 39138635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 330
Target Start/End: Original strand, 39396563 - 39396835
Alignment:
Q  46 acatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagac 145  Q
    |||||| ||| ||||||||||||||||||||||||  | |||||| || |||| ||||||        || || ||||| || ||||||| ||  || ||    
T  39396563 acataccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgt--------gctga-gcaaccgatgcaaaaagctccaaaac 39396653  T
Q  146 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 245  Q
    |||||||||||| ||  || ||| |||||| ||||| || |||| ||| | ||| |||||| || ||||||||||||| ||||||||| | |||| ||||    
T  39396654 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttctctaatgtaagct 39396753  T
Q  246 ttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagca 330  Q
     |||| |||   ||||||||||  ||||| ||||||||||||| |    ||||| ||||||||||| ||||||||| ||||||||    
T  39396754 ctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggt---ctaatagttggtgagattctcatcagttcttctagca 39396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 39421257 - 39421373
Alignment:
Q  218 attttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatc 317  Q
    |||||| |||||||||| ||| ||||||||||| |||   || |||||||| ||||| ||| ||||||||| ||   |||||| |||||||||| |||||    
T  39421257 attttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttt---taatatgtggtgagattttcatc 39421353  T
Q  318 agttgttctagcagatagat 337  Q
    ||||||||||||||| ||||    
T  39421354 agttgttctagcagaaagat 39421373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 39472761 - 39472870
Alignment:
Q  141 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 240  Q
    ||||||||||||||||||||  || ||| |||| | ||||| || |||| || |||||| |||||| |  ||||||||||||| ||||||||||||||||    
T  39472761 aagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgt 39472860  T
Q  241 tagctttcaa 250  Q
    || |||||||    
T  39472861 taactttcaa 39472870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 337
Target Start/End: Original strand, 44895133 - 44895297
Alignment:
Q  170 caatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaac 269  Q
    |||||| ||||| || |||| || |||||| |||||| || ||||||||||||| |||||| |||| ||||||||||| || | |   |||||||||||     
T  44895133 caatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaatttatgtgctagcttcaat 44895232  T
Q  270 gcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 337  Q
    ||||  |||||||||| || ||||||||   ||||||| |||  |||||||  |||||||||||||||    
T  44895233 gcttgttctcttacacgaggtttaataa---ttggtgacattcccatcagtgtttctagcagatagat 44895297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 274
Target Start/End: Original strand, 39412957 - 39413159
Alignment:
Q  63 tttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagacttcatcttcatcaaagt 162  Q
    ||||||||||||||||| | | |||||||| |||||||||||| || ||||         ||| | ||||||| ||  |||| |||||||||||| ||      
T  39412957 tttgcaaaacccagggttccaaacagcttcgcagctatcttgtgttgagca---------acaaatgcaaaaagctccaagatttcatcttcatccaaaa 39413047  T
Q  163 aattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctag 262  Q
    || ||||||||||  |||  || |||| ||| ||||| | |||| || ||||||| ||||||||||||||||||| |||||||||||| |||   |||||    
T  39413048 aagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagctttcaaatcaagtgctag 39413147  T
Q  263 cttcaacgcttc 274  Q
    |||||| |||||    
T  39413148 cttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 337
Target Start/End: Original strand, 39380496 - 39380684
Alignment:
Q  146 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 245  Q
    |||||||||||| ||  || ||| |||||| ||||| || |||| || ||||||||||||| || ||| ||||| ||| ||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  246 ttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 337  Q
    ||||| |||   |||||| |||  ||||| ||||||||||||  ||    |||||| ||||||| | |||||||||||||||||||| ||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatctt---caatattcggtgagactctcatcagttgttctagcagaaagat 39380684  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 325
Target Start/End: Complemental strand, 39223893 - 39223715
Alignment:
Q  144 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 243  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||||| ||||| ||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  244 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttc 325  Q
    |||| || ||| | ||||||||||| ||||  |||||  |||||| ||    ||||| |||||||||| |||||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggtt---caatatctggtgagattctcatcagttgttc 39223715  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 44749560 - 44749603
Alignment:
Q  8 gagaaatattggtgaccgactaaagaatttctaaatcaacatac 51  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||    
T  44749560 gagagatactggtgactgactaaagaatttctaaatcaacatac 44749603  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 39099652 - 39099584
Alignment:
Q  261 agcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 332  Q
    ||||||| |||||| ||||||||||||| ||| |||   | |||||||||| ||||||||||||| ||||||    
T  39099652 agcttcatcgcttcttctcttacacaaggtttgata---tgtggtgagattctcatcagttgttcgagcaga 39099584  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 39188804 - 39188857
Alignment:
Q  194 tagaaatccaagagcctccaaagaattttcggtattttctttcatgttagcttt 247  Q
    |||||| |||||| || ||||||||||| |  ||||||||||||||||||||||    
T  39188804 tagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttt 39188857  T

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Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 44730402 - 44730154
Alignment:
Q  30 aagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaag 129  Q
    |||||||||| ||||||| ||||||||||||||||  |||||  |||||||||| |||  ||| |||||||||||| |||| ||         ||||| |    
T  44730402 aagaatttcttaatcaacttacgagagactttattcacaaaatgcagggtcctaaacacattcgcagctatcttgtgttcaaca---------acagatg 44730312  T
Q  130 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 229  Q
    |  ||| ||   ||||||||||| ||||||||||| ||| |||||  |||||||  ||||||||||||||||| ||| ||||| |||||||||| |||||    
T  44730311 cgtaaagctcagagacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtatt 44730212  T
Q  230 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaa 287  Q
    |||||| ||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  44730211 ttcttttatgttagctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 44949787 - 44950037
Alignment:
Q  30 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 126  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| |||||||         ||||    
T  44949787 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 44949877  T
Q  127 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 226  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  44949878 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 44949977  T
Q  227 attttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacaca 286  Q
    ||||||||| || |||  ||||||||||   ||||||||||| ||||||||||| |||||    
T  44949978 attttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 44950037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 337
Target Start/End: Complemental strand, 45343150 - 45342957
Alignment:
Q  141 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 240  Q
    ||||||||||||| ||||||  || ||| |||| | | ||| || ||||||| |||||| |||||| | | ||| || ||||| |||||| |||||| ||    
T  45343150 aagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtatttcctttcacgt 45343051  T
Q  241 tagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 337  Q
    ||||||||||||||   |||||||| || ||||| ||||||||||||| ||||||| |   |||  ||||| |||||||||||||||| ||||||||    
T  45343050 tagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatact---tggcaagattctcatcagttgttctaggagatagat 45342957  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 330
Target Start/End: Complemental strand, 17060852 - 17060645
Alignment:
Q  120 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 219  Q
    |||||||| |||||||  |  ||||||||||||| |||||| ||| ||| |||||| |||| ||| || ||||| |||||||| ||| ||||||| ||||    
T  17060852 gcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaat 17060753  T
Q  220 tttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcag 319  Q
     ||| |||||| |||| ||||||||||||||||||   ||||||||||| ||||| ||| |||||||||||||   |||||||||||| |||||||||||    
T  17060752 attcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagattt---aatatttggtgacattatcatcag 17060656  T
Q  320 ttgttctagca 330  Q
    |||||||||||    
T  17060655 ttgttctagca 17060645  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 337
Target Start/End: Complemental strand, 33562471 - 33562281
Alignment:
Q  144 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 243  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||| ||  ||| |||||||||||||||||||    
T  33562471 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtattttctttcatgttag 33562372  T
Q  244 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 337  Q
    ||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||    ||||| |||||||||| ||||||||||||| || ||||||||    
T  33562371 ctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---caatatctggtgagattctcatcagttgttccagaagatagat 33562281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 5767 - 6017
Alignment:
Q  30 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 126  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| |||||||         ||||    
T  5767 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 5857  T
Q  127 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 226  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  5858 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 5957  T
Q  227 attttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacaca 286  Q
    ||||||||| || |||  ||||||||||   ||||||||||| ||||||||||| |||||    
T  5958 attttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 6017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 141 - 332
Target Start/End: Complemental strand, 19809085 - 19808900
Alignment:
Q  141 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 240  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || |||| || |||||| |||||| || ||| ||||||||| ||| |||   ||||||    
T  19809085 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtacttt---tcatgt 19808989  T
Q  241 tagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 332  Q
    |||||||||| |||   ||||||||||| | ||| |||||||||| || ||   |||| || ||||||||| ||||||||||||||||||||    
T  19808988 tagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtt---taatcttcggtgagattctcatcagttgttctagcaga 19808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 337
Target Start/End: Complemental strand, 16114477 - 16114359
Alignment:
Q  216 gaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatca 315  Q
    |||||||  ||||| ||| |||||| ||||||||| || | |||||||||||| ||||  |||||||||| || ||   ||||| ||||||| ||| |||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtt---taatagttggtgatattctca 16114381  T
Q  316 tcagttgttctagcagatagat 337  Q
    |||||| ||||| |||||||||    
T  16114380 tcagttcttctaacagatagat 16114359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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