View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3833_low_9 (Length: 342)

Name: NF3833_low_9
Description: NF3833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3833_low_9
NF3833_low_9
[»] chr3 (1 HSPs)
chr3 (6-328)||(23776815-23777137)
[»] scaffold0422 (1 HSPs)
scaffold0422 (107-313)||(9862-10068)
[»] chr2 (2 HSPs)
chr2 (107-313)||(29406161-29406367)
chr2 (17-97)||(29406012-29406092)
[»] chr1 (6 HSPs)
chr1 (199-313)||(22046044-22046160)
chr1 (7-94)||(22038116-22038203)
chr1 (7-94)||(22047450-22047537)
chr1 (107-171)||(22036484-22036545)
chr1 (107-171)||(22046214-22046275)
chr1 (199-304)||(22036323-22036430)
[»] chr6 (8 HSPs)
chr6 (199-313)||(18203579-18203698)
chr6 (199-313)||(18223385-18223504)
chr6 (227-313)||(18176297-18176386)
chr6 (107-171)||(23098481-23098545)
chr6 (107-171)||(18176470-18176531)
chr6 (107-171)||(18203464-18203525)
chr6 (107-171)||(18223270-18223331)
chr6 (274-313)||(23098342-23098381)
[»] chr5 (2 HSPs)
chr5 (111-171)||(20668134-20668194)
chr5 (123-170)||(27031124-27031171)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 23776815 - 23777137
Alignment:
Q  6 cacagaatccgcatgcaacattgttggtgctggaaggtcggggttttccttggagatggtggcgagtaatgcaacacgccagtgtactttgtgatattga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23776815 cacagaatccgcatgcaacattgttggtgctggaaggtcggggttttccttggagatggtggcgagtaatgcaacacgccagtgtactttgtgatattga 23776914  T
Q  106 ttattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaacataagaagtataattttcttaacttctgaaagga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23776915 ttattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaacataagaagtatagttttcttaacttctgaaagga 23777014  T
Q  206 agcattatatagctgaatttcaggagaagatgcagataacaaaaaagaaatacatggtgaagtataaaggcctagaagtgatgagatgaagatgtgaatg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23777015 agcattatatagctgaatttcaggagaagatgcagataacaaaaaagaaacacatggtgaagtataaaggcctagaagtgatgagatgaagatgtgaatg 23777114  T
Q  306 atcaagtaaacttgcttatatat 328  Q
    |||||||||||||| ||||||||    
T  23777115 atcaagtaaacttggttatatat 23777137  T

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Target: scaffold0422 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 107 - 313
Target Start/End: Original strand, 9862 - 10068
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaacataagaagtataattttcttaacttctgaaaggaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9862 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaacataagaagtatagttttcttaacttctgaaaggaa 9961  T
Q  207 gcattatatagctgaatttcaggagaagatgcagataacaaaaaagaaatacatggtgaagtataaaggcctagaagtgatgagatgaagatgtgaatga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9962 gcattatatagctgaatttcaggagaagatgcagataacaaaaaagaaacacatggtgaagtataaaggcctataagtgatgagatgaagatgtgaatga 10061  T
Q  307 tcaagta 313  Q
    |||||||    
T  10062 tcaagta 10068  T

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Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 107 - 313
Target Start/End: Original strand, 29406161 - 29406367
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaacataagaagtataattttcttaacttctgaaaggaa 206  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29406161 tattgattattctcttattgtcttcatcttgcttgcatatattaaaggtttttaatttcattaacataagaagtatagttttcttaaattctgaaaggaa 29406260  T
Q  207 gcattatatagctgaatttcaggagaagatgcagataacaaaaaagaaatacatggtgaagtataaaggcctagaagtgatgagatgaagatgtgaatga 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  29406261 gcattatatagctgaatttcaggagaagatgcggataacaaaaaagaaacacatggtgaagtataaaggtctataagtgatgagatgaagatgtgaatga 29406360  T
Q  307 tcaagta 313  Q
    |||||||    
T  29406361 tcaagta 29406367  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 29406012 - 29406092
Alignment:
Q  17 catgcaacattgttggtgctggaaggtcggggttttccttggagatggtggcgagtaatgcaacacgccagtgtactttgt 97  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  29406012 catgcaacattgttggtgctagaaggtcggagttttccttggagatggtggcgagtaatgcaacatgccagtgtaccttgt 29406092  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 199 - 313
Target Start/End: Complemental strand, 22046160 - 22046044
Alignment:
Q  199 gaaaggaagcattatatagctgaa--tttcaggagaagatgcagataacaaaaaagaaatacatggtgaagtataaaggcctagaagtgatgagatgaag 296  Q
    |||| ||||||||| ||| |||||  |||||||||||||||||||| |||||||| ||| ||||||||| | ||||||||||| | |||||| |||||||    
T  22046160 gaaaagaagcattagatatctgaaattttcaggagaagatgcagattacaaaaaacaaacacatggtgagggataaaggcctataggtgatgggatgaag 22046061  T
Q  297 atgtgaatgatcaagta 313  Q
    |||||||||||||||||    
T  22046060 atgtgaatgatcaagta 22046044  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 22038203 - 22038116
Alignment:
Q  7 acagaatccgcatgcaacattgttggtgctggaaggtcggggttttccttggagatggtggcgagtaatgcaacacgccagtgtactt 94  Q
    ||||||||| |||||||| |||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||    
T  22038203 acagaatccacatgcaacgttgtcggtgctggaaggtcggggttctccttgaagatggtggtgagtaatgcaacatgccagtgtactt 22038116  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 22047537 - 22047450
Alignment:
Q  7 acagaatccgcatgcaacattgttggtgctggaaggtcggggttttccttggagatggtggcgagtaatgcaacacgccagtgtactt 94  Q
    ||||||||| |||||||| |||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||    
T  22047537 acagaatccacatgcaacgttgtcggtgctggaaggtcggggttctccttgaagatggtggtgagtaatgcaacatgccagtgtactt 22047450  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 22036545 - 22036484
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaac 171  Q
    ||||||||||||||| |||||||||||   ||||||||||||||||| |||||||||||||||||    
T  22036545 tattgattattctctaattgtcttctt---gcttgcatatattaaagatttttaatttcattaac 22036484  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 22046275 - 22046214
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaac 171  Q
    ||||||||||||||| |||||||||||   ||||||||||||||||| |||||||||||||||||    
T  22046275 tattgattattctctaattgtcttctt---gcttgcatatattaaagatttttaatttcattaac 22046214  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 22036430 - 22036323
Alignment:
Q  199 gaaaggaagcattatatagctgaatttc--aggagaagatgcagataacaaaaaagaaatacatggtgaagtataaaggcctagaagtgatgagatgaag 296  Q
    |||||||| ||||| ||| ||||||||   |||||||||||||||| |||||||| | | ||||||||| | ||||| ||||| | |||||| |||||||    
T  22036430 gaaaggaaacattagatatctgaattttttaggagaagatgcagattacaaaaaaaatacacatggtgagggataaatgcctataggtgatgggatgaag 22036331  T
Q  297 atgtgaat 304  Q
    ||||||||    
T  22036330 atgtgaat 22036323  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 18203579 - 18203698
Alignment:
Q  199 gaaaggaagcattatatagctgaa--tttcaggagaagatgcagataacaaaaaagaaatacat---ggtgaagtataaaggcctagaagtgatgagatg 293  Q
    |||||||||||| | ||| |||||  ||| |||||||||||||||| |||||||| ||| ||||   ||||| | ||||||||||| | |||||| ||||    
T  18203579 gaaaggaagcatcagatatctgaaatttttaggagaagatgcagattacaaaaaacaaacacatattggtgagggataaaggcctataggtgatgggatg 18203678  T
Q  294 aagatgtgaatgatcaagta 313  Q
    ||||||||||||||||||||    
T  18203679 aagatgtgaatgatcaagta 18203698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 18223385 - 18223504
Alignment:
Q  199 gaaaggaagcattatatagctgaa--tttcaggagaagatgcagataacaaaaaagaaatacat---ggtgaagtataaaggcctagaagtgatgagatg 293  Q
    |||||||||||| | ||| |||||  ||| |||||||||||||||| |||||||| ||| ||||   ||||| | ||||||||||| | |||||| ||||    
T  18223385 gaaaggaagcatcagatatctgaaatttttaggagaagatgcagattacaaaaaacaaacacatattggtgagggataaaggcctataggtgatgggatg 18223484  T
Q  294 aagatgtgaatgatcaagta 313  Q
    ||||||||||||||||||||    
T  18223485 aagatgtgaatgatcaagta 18223504  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 18176386 - 18176297
Alignment:
Q  227 aggagaagatgcagataacaaaaaagaaatacat---ggtgaagtataaaggcctagaagtgatgagatgaagatgtgaatgatcaagta 313  Q
    |||||||||||||||| |||||||| ||| ||||   ||||| | ||||||||||| | |||||| ||||||||||||||||||||||||    
T  18176386 aggagaagatgcagattacaaaaaacaaacacatattggtgagggataaaggcctataggtgatgggatgaagatgtgaatgatcaagta 18176297  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 23098545 - 23098481
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaac 171  Q
    |||||||||||||| |||| | ||||||||||||| || |||| |||||||||||||||||||||    
T  23098545 tattgattattctcctattctgttcttcttgcttggatgtatttaaggtttttaatttcattaac 23098481  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 18176531 - 18176470
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaac 171  Q
    ||||||||||||||| |||||||||||   ||||||||||||||||| |||||||| ||||||||    
T  18176531 tattgattattctctaattgtcttctt---gcttgcatatattaaagatttttaatatcattaac 18176470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 18203464 - 18203525
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaac 171  Q
    ||||||||||||||| ||||||||   |||||||||||||||||||| |||||||| ||||||||    
T  18203464 tattgattattctctaattgtctt---cttgcttgcatatattaaagatttttaatatcattaac 18203525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 18223270 - 18223331
Alignment:
Q  107 tattgattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaac 171  Q
    ||||||||||||||| ||||||||   |||||||||||||||||||| |||||||| ||||||||    
T  18223270 tattgattattctctaattgtctt---cttgcttgcatatattaaagatttttaatatcattaac 18223331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 23098381 - 23098342
Alignment:
Q  274 ggcctagaagtgatgagatgaagatgtgaatgatcaagta 313  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  23098381 ggcctagaagtgatgagatgaagatgtgaacgatcaagta 23098342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 20668194 - 20668134
Alignment:
Q  111 gattattctcttattgtcttcttcttgcttgcatatattaaaggtttttaatttcattaac 171  Q
    ||||||||||| ||||| ||||||||||||| || |||| || ||||||||||||||||||    
T  20668194 gattattctctaattgttttcttcttgcttggatgtattcaatgtttttaatttcattaac 20668134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 27031124 - 27031171
Alignment:
Q  123 attgtcttcttcttgcttgcatatattaaaggtttttaatttcattaa 170  Q
    ||||||||||||||||||| || |||||||||| |||||||| |||||    
T  27031124 attgtcttcttcttgcttggatgtattaaaggtatttaattttattaa 27031171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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