View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3834_high_3 (Length: 337)
Name: NF3834_high_3
Description: NF3834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3834_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 42 - 320
Target Start/End: Original strand, 33984194 - 33984472
Alignment:
| Q |
42 |
atagtgtagttgtatctattagttttatattgcatgatgaaaggccaaaaatattgttgcaataaaagagacattaggactaacataaatctatggttcc |
141 |
Q |
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| T |
33984194 |
atagtgtagttgtatctattagttttatattgcatgatgaaaggccaaaaatattgttgcaataaaagagacattaggactaacataaatttatggttcc |
33984293 |
T |
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| Q |
142 |
ttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggtacc |
241 |
Q |
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| T |
33984294 |
ttttacagtcttgaaatatggtacaacacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggtacc |
33984393 |
T |
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| Q |
242 |
acatttcatttctaattcatattcttacttttacatttgcttcaatttagtactaagggacaaaatcgccatggttttt |
320 |
Q |
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| T |
33984394 |
acatttcatttctaattcatattcttacttttacatttgcttcaatttagtactaagggacaaaatcgccatggttttt |
33984472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 33993837 - 33993958
Alignment:
| Q |
119 |
gactaacataaatctatggttccttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccat |
218 |
Q |
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| T |
33993837 |
gactaacatgaagctatggttactttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccat |
33993936 |
T |
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| Q |
219 |
agatgctctatccatatggtac |
240 |
Q |
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| T |
33993937 |
tgatgctcttgctatatggtac |
33993958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 34016093 - 34016190
Alignment:
| Q |
142 |
ttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggta |
239 |
Q |
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|||| ||||||||| ||||||||| ||| || ||||||||| ||||||| |||||||||||||| |||||| || ||||||||| |||||||||| |
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| T |
34016093 |
ttttgcagtcttgagctatggtacaacacggtattgattcttttaacaggcaacatggaaaatgcagagattcaaattgatgctctagccatatggta |
34016190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 33984139 - 33984173
Alignment:
| Q |
7 |
gtgagatgaatataattacatatgttgccctatag |
41 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
33984139 |
gtgatatgaatataattacatatgttgccctatag |
33984173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 9236558 - 9236452
Alignment:
| Q |
133 |
tatggttccttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatcca |
232 |
Q |
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|||| |||||||||||||||||| |||||||||||||| ||||||||||| |||| || |||||| || |||||||| || || | || |||| |||| |
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| T |
9236558 |
tatgattccttttacagtcttgaggtatggtacagcacaattttgattcttttaactggcaacatgaaagatgctgaggttgcccttaattctctgtcca |
9236459 |
T |
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| Q |
233 |
tatggta |
239 |
Q |
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||||||| |
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| T |
9236458 |
tatggta |
9236452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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