View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3834_low_2 (Length: 484)
Name: NF3834_low_2
Description: NF3834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3834_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 1021564 - 1021089
Alignment:
| Q |
1 |
tcagaaactgtacggagttttgtgtttgttacggcggaaggagtaggaggaggtggcggtgtctgacaagttttaactgtgttgatgaaaacagcgggaa |
100 |
Q |
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| T |
1021564 |
tcagaaactgtacggagttttgtgtttgttacggcggaaggagtaggaggaggtggcggtgtctgacaagttttaactgtgttgatgaaaacagcgggaa |
1021465 |
T |
|
| Q |
101 |
tgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaatcagaatgagccgctgcgag |
200 |
Q |
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| T |
1021464 |
tgtcgtcggagacggagagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaatcagaatgagccgctgcgag |
1021365 |
T |
|
| Q |
201 |
gtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtcgagtttagacaccgtacaacccatt |
300 |
Q |
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| T |
1021364 |
gtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtcgagtttagacacagtgcaacccatt |
1021265 |
T |
|
| Q |
301 |
gtttcaggtggtatatatataccgta-----------tatttgaacgtgtgtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaa |
389 |
Q |
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| T |
1021264 |
gtttcaggtggtatatatataccgtatattatacacgtatttgaacgtctgtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaa |
1021165 |
T |
|
| Q |
390 |
ac-aagaacttgaaaaac-aagtgcaagtgttagttaatctgaagtgctatgatatctaggttggttaggtttattgaaatgatg |
472 |
Q |
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| T |
1021164 |
acaaagaacttgaaaaacaaagtgcaagt----gttaatctgaagtgc-----tatctaggttggttaggtttactgaagtgatg |
1021089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 4970857 - 4970737
Alignment:
| Q |
69 |
agttttaactgtgttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaaga |
168 |
Q |
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|||||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4970857 |
agtttttactgtgttgacgaaaacggcgggaatgtcgtcgaagacggcgagaggttcactggcagcgaaggtggagagtgcggaaccggtgaggcgaaga |
4970758 |
T |
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| Q |
169 |
gagttacagtaatcagaatga |
189 |
Q |
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|||||| |||||||||||||| |
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| T |
4970757 |
gagttatagtaatcagaatga |
4970737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 6344971 - 6345091
Alignment:
| Q |
69 |
agttttaactgtgttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaaga |
168 |
Q |
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|||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
6344971 |
agtttttactgtgttgacgaaaacggcgggaatgtcgtcggagacgacgagaggttcactggcggcgaaggtggagagtgcggaaccggtgaggcgaaga |
6345070 |
T |
|
| Q |
169 |
gagttacagtaatcagaatga |
189 |
Q |
| |
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||||||||||||||||||||| |
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| T |
6345071 |
gagttacagtaatcagaatga |
6345091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 272
Target Start/End: Original strand, 31344534 - 31344725
Alignment:
| Q |
81 |
gttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaa |
180 |
Q |
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|||||||||||| |||||| ||| || || |||| |||||||||||||| ||||||||||||||| |||| |||||||| || || || ||||| |
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| T |
31344534 |
gttgatgaaaacggcgggagtgttatcagaaacggagagaggttcaccggaggcgaaagtggagagggcggtgccggtgagacggagggaacggcagtag |
31344633 |
T |
|
| Q |
181 |
tcagaatgagccgctgcgaggtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgtt |
272 |
Q |
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|| || ||||| || ||||||| || ||||| || | ||||| ||||| |||||||| || |||||||||||||| || || |||||||| |
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| T |
31344634 |
tcggagtgagcagcggcgaggtgatgacgagcatagacagcttctttcataagacggcgacggtctttgcaccgtcgcactgtatcttcgtt |
31344725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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