View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3834_low_3 (Length: 435)
Name: NF3834_low_3
Description: NF3834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3834_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 247 - 435
Target Start/End: Original strand, 42450200 - 42450386
Alignment:
| Q |
247 |
tgttccaaatcagtcaactaggcgtgttcaagtttgatggtttagcaattgagcttatgaatttcatattaaaaattaggtaatatgtggaaagattgac |
346 |
Q |
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| T |
42450200 |
tgttccaaatcagttaactaggcgtgttcaagtttgatggtttagcaattgagcttatgaatttcatattaaaaattaggtaatatgtggaaagattgac |
42450299 |
T |
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| Q |
347 |
atgtttttctttaatatattggaagcgaaacacatatttttctttcagtcttgtttctgaaacatgcacagatacagttgccatatgtg |
435 |
Q |
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| T |
42450300 |
atgtttttctttaatatattggaagcgaaacacatatttttc--tcagtcttgtttctgaaacatgcacagacacagttgccatatgtg |
42450386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 42449962 - 42450157
Alignment:
| Q |
1 |
ctgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggagacaaatttgattgtcacataggaaagtacaagaaaagctttcttccgatc |
100 |
Q |
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| T |
42449962 |
ctgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggagacaaatttgattgtcacataggaaagtacaagaaaagctttcttccgatc |
42450061 |
T |
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| Q |
101 |
aaaggaataaataattaattgttttcgctcgaggtatgtgattcaatattaggattttaacttgtatatatatgttcgaacttcataacactctgtatga |
200 |
Q |
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| T |
42450062 |
aaagg--------atgaattgttttcgctcgaggtatgtgattcgatattaggattttaacttgtatatatatgttcgaacttcattacactctgtatga |
42450153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 42262545 - 42262669
Alignment:
| Q |
2 |
tgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggagacaaatttgattgtcacataggaaagtacaagaaaagctttcttccgatca |
101 |
Q |
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| T |
42262545 |
tgggttgatttgaaaactcagatgattgaagagcttggtgttgaaggagacaaatttcgttgtcatataggaaagtacaagaaaagctttcttccgattg |
42262644 |
T |
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| Q |
102 |
aaggaataaataattaattgttttc |
126 |
Q |
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| T |
42262645 |
aaggaataaatacgtagttgttttc |
42262669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 39720845 - 39720788
Alignment:
| Q |
68 |
ataggaaagtacaagaaaagctttcttccgatcaaaggaataaataattaattgtttt |
125 |
Q |
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| T |
39720845 |
ataggaaagtacaaaaaaagctttcttccaataggaggaatgaataattaattttttt |
39720788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 42263426 - 42263463
Alignment:
| Q |
280 |
ttgatggtttagcaattgagcttatg-aatttcatatt |
316 |
Q |
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| T |
42263426 |
ttgatggtttagcaattgagcttatgaaatttcatatt |
42263463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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