View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3834_low_5 (Length: 313)

Name: NF3834_low_5
Description: NF3834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3834_low_5
NF3834_low_5
[»] chr1 (9 HSPs)
chr1 (18-305)||(30623757-30624044)
chr1 (18-305)||(30629388-30629675)
chr1 (155-273)||(30689733-30689851)
chr1 (155-210)||(30718776-30718831)
chr1 (155-273)||(30671838-30671956)
chr1 (155-213)||(30698619-30698677)
chr1 (155-291)||(30710502-30710638)
chr1 (155-198)||(30656677-30656720)
chr1 (149-183)||(33042631-33042665)
[»] chr7 (2 HSPs)
chr7 (78-261)||(38862419-38862602)
chr7 (135-266)||(38830693-38830824)
[»] chr4 (3 HSPs)
chr4 (113-272)||(19719892-19720051)
chr4 (113-261)||(19840553-19840701)
chr4 (113-272)||(19892783-19892942)
[»] chr2 (1 HSPs)
chr2 (149-280)||(4420143-4420274)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 30623757 - 30624044
Alignment:
Q  18 gtttcctcttgagtgccaaaataggagaagaaccatctttttcccaagacttgttattctccatatctttcaatgattccctcacaacatgttcaggaaa 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30623757 gtttcctcttgagtgccaaaacaggagaagaaccatctttttcccaagacttgttattctccatatctttcaatgattccctcacaacatgttcaggaaa 30623856  T
Q  118 attcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30623857 attcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaaca 30623956  T
Q  218 ccttttcttgttgagtctcttatttccgctgcgaattttccccaaggtcttcttctaactcctttgtatgacttcttaggtgatgatg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30623957 ccttttcttgttgagtctcttatttccgctgcgaattttccccatggtcttcttctaactcctttgtatgacttcttaggtgatgatg 30624044  T

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Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 30629388 - 30629675
Alignment:
Q  18 gtttcctcttgagtgccaaaataggagaagaaccatctttttcccaagacttgttattctccatatctttcaatgattccctcacaacatgttcaggaaa 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30629388 gtttcctcttgagtgccaaaacaggagaagaaccatctttttcccaagacttgttattctccatatctttcaatgattccctcacaacatgttcaggaaa 30629487  T
Q  118 attcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  30629488 attcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaaca 30629587  T
Q  218 ccttttcttgttgagtctcttatttccgctgcgaattttccccaaggtcttcttctaactcctttgtatgacttcttaggtgatgatg 305  Q
    || ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||| | |||||||||||||||    
T  30629588 ccatttctagttgagtctcttatttccgctgcgaattttccccatggtcttctcctaactcctctatatggcctcttaggtgatgatg 30629675  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 30689733 - 30689851
Alignment:
Q  155 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctgcgaatt 254  Q
    |||||||||||||||||||||||| |||||||  |||||||||| |||| |||||| ||    |||  |||||||| |||||| || || |||||  | |    
T  30689733 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtgtctctgatctctgctgcatact 30689832  T
Q  255 ttccccaaggtcttcttct 273  Q
    |||||||||||||| ||||    
T  30689833 ttccccaaggtctttttct 30689851  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 30718776 - 30718831
Alignment:
Q  155 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaac 210  Q
    |||||||||||||||||||||||| |||||||  |||||||||| |||| ||||||    
T  30718776 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 30718831  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 30671838 - 30671956
Alignment:
Q  155 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctgcgaatt 254  Q
    |||||||||||||||||||||||| |||||||  | |||||||| |||| |||||| ||   |||    ||||||| |||||||||||| || ||  |||    
T  30671838 gcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccccttgttgtgtctcttatttctgcagcatatt 30671937  T
Q  255 ttccccaaggtcttcttct 273  Q
    | |||||||||||| ||||    
T  30671938 tcccccaaggtctttttct 30671956  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 30698619 - 30698677
Alignment:
Q  155 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactct 213  Q
    |||||||||||||||||||||||| |||||||  |||||||||| || | |||||||||    
T  30698619 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactct 30698677  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 291
Target Start/End: Original strand, 30710502 - 30710638
Alignment:
Q  155 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctgcgaatt 254  Q
    |||||||||||||||||||||||| |||||||  |||||||||| || | |||||| ||    |||  ||||||||  ||||| ||||| || ||  |||    
T  30710502 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgttgtatctctgatttctgcagcatatt 30710601  T
Q  255 ttccccaaggtcttcttctaactcctttgtatgactt 291  Q
    |||||||| ||||| | ||||| ||| | ||||||||    
T  30710602 ttccccaacgtcttttcctaacacctatatatgactt 30710638  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 30656677 - 30656720
Alignment:
Q  155 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgt 198  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  30656677 gcttgatcataagctaaagcagcatcttcagcactatcaaatgt 30656720  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 33042665 - 33042631
Alignment:
Q  149 aaagctgcttgatcataagctaaagcagcagcttc 183  Q
    |||||||||||||||||||| ||||||||||||||    
T  33042665 aaagctgcttgatcataagccaaagcagcagcttc 33042631  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 261
Target Start/End: Complemental strand, 38862602 - 38862419
Alignment:
Q  78 ccatatctttcaatgattccctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagc 177  Q
    |||| ||||| | |||||| ||||| || | ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  38862602 ccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagcagc 38862503  T
Q  178 agcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctgcgaattttcccca 261  Q
     ||||| || || || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  38862502 tgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgcggcaaattttcccca 38862419  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 38830824 - 38830693
Alignment:
Q  135 atcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtc 234  Q
    |||||| |||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || | |||||| |||||||||| |||    
T  38830824 atcctcgtgttaagaaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaatccacacacgaacaccatttcttgttgtgtc 38830725  T
Q  235 tcttatttccgctgcgaattttccccaaggtc 266  Q
     ||||| || ||||||||||||||||| ||||    
T  38830724 ccttatctctgctgcgaattttccccacggtc 38830693  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 272
Target Start/End: Original strand, 19719892 - 19720051
Alignment:
Q  113 ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactc 212  Q
    ||||||||||||||||||| ||| ||||||| | | ||||| ||||| || ||||||||||||||  |||| || || |  ||||| |||| ||| ||||    
T  19719892 ggaaaattcaacactgccaatgaacctcttgctaaaaaagcagcttggtcgtaagctaaagcagcttcttcggccgtgttgaatgttccaagccatactc 19719991  T
Q  213 taacaccttttcttgttgagtctcttatttccgctgcgaattttccccaaggtcttcttc 272  Q
    || | ||||||||||||||||| ||||| ||||| |||||||| ||||| || |||||||    
T  19719992 tagccccttttcttgttgagtcccttatctccgccgcgaatttcccccatggccttcttc 19720051  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 19840701 - 19840553
Alignment:
Q  113 ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactc 212  Q
    |||||||||||||| |||| ||| ||||||| | |  |||| ||||| || ||||||||||||||  |||| || || |  ||||| |||| ||| ||||    
T  19840701 ggaaaattcaacacagccaatgaacctcttgctaaataagcggcttggtcgtaagctaaagcagcttcttcggccgtgttgaatgttccaagccatactc 19840602  T
Q  213 taacaccttttcttgttgagtctcttatttccgctgcgaattttcccca 261  Q
    || | ||||||||||||||||| ||||| ||||| |||||||| |||||    
T  19840601 tagccccttttcttgttgagtcccttatctccgccgcgaatttccccca 19840553  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 272
Target Start/End: Original strand, 19892783 - 19892942
Alignment:
Q  113 ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactc 212  Q
    ||||||||||||||||||| ||| ||| ||| ||| ||||| ||||| |||||||||||||| ||  ||||  | || |  ||||| |||| ||| || |    
T  19892783 ggaaaattcaacactgccaatgaaccttttgctgaaaaagcggcttggtcataagctaaagcggcttcttcctccgtgttgaatgttccaagccataccc 19892882  T
Q  213 taacaccttttcttgttgagtctcttatttccgctgcgaattttccccaaggtcttcttc 272  Q
    || | ||||||||||| ||||| ||||| || || |||||||| ||||| || |||||||    
T  19892883 tagccccttttcttgtcgagtcccttatctcggccgcgaatttcccccatggccttcttc 19892942  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 4420143 - 4420274
Alignment:
Q  149 aaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctg 248  Q
    ||||| |||| ||||||||||||||||||   ||||||||||||||||||||||| |||||||||   ||||||  ||| ||| ||||| ||||| ||||    
T  4420143 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgatgaatctctaatttcagctg 4420242  T
Q  249 cgaattttccccaaggtcttcttctaactcct 280  Q
    |  |||||||||| || ||||| || ||||||    
T  4420243 catattttccccatggccttctccttactcct 4420274  T

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