View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3834_low_6 (Length: 276)
Name: NF3834_low_6
Description: NF3834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3834_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 14426124 - 14425954
Alignment:
| Q |
1 |
tttcaaatcaatttggtaggtttctaacttcatttcaaagcaaggataatatatatactttatgctttt--acttgtagcctcttaggaatatggttttg |
98 |
Q |
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| T |
14426124 |
tttcaaatcaatttggtaggtttctaacttcatttcaaagcaaggataatata----ctttatgcttttttacttgtagcctcttaggaatatggttttg |
14426029 |
T |
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| Q |
99 |
ctttgtaattttttatatgtcctagtttataagcttg--tattgtatgggatatgctccaagggtctgacaagcc |
171 |
Q |
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| T |
14426028 |
ctttgtaattttttatatgtcctagtttatcagcttgtatattgtatgggatatgctccaagggtctgacaagcc |
14425954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 14425298 - 14425208
Alignment:
| Q |
174 |
tccagactataggactccatatcttataggtctttgttgtcattctcttgtccatttgagttatcttcttcactttcaaattttccctctct |
265 |
Q |
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| T |
14425298 |
tccagactataggactccatatcttataggtctttgttgtcat-ctcttgtccatttgagctatcttcttcactttcaaattttccctctct |
14425208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 14412678 - 14412609
Alignment:
| Q |
66 |
ttttacttgtagcctcttaggaatatggttttgctttgtaattttttatatgtcctagtttataagcttgt |
136 |
Q |
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| T |
14412678 |
ttttacttctagactcttaggaatatggttt-gctttgtaattttttttatgtcttggtttataagcttgt |
14412609 |
T |
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