View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3834_low_7 (Length: 273)
Name: NF3834_low_7
Description: NF3834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3834_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 14426444 - 14426305
Alignment:
| Q |
107 |
ctgctgatttggatttaaaaaccatttataaaacatttcaagcgatggttgcttttgtttaatcatattattgaggttttagatcctcttatgacaatat |
206 |
Q |
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| T |
14426444 |
ctgctgatttggatttaaaaaccatttataaaacatttcaagcgatggttgcttttgtttaatcatattattgaggttttagatcctcttatgacaatgt |
14426345 |
T |
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| Q |
207 |
tagaaatatgtgctctaaaccctcacatcatgtatttcct |
246 |
Q |
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| T |
14426344 |
tagaaatatgtgttctaaaccctcacatcatgtttttcct |
14426305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 14416403 - 14416283
Alignment:
| Q |
107 |
ctgctgatttggatttaaaaaccatttataaaacatttcaagcgatggttgcttttgtttaatcatattattgaggttttagatcctcttatgacaatat |
206 |
Q |
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| T |
14416403 |
ctgcttatttggatttaaaaatcatttatgaaacatttcaagcaagggttgcttttgtttaataatattatggaggtgttagatccttttatgacaatat |
14416304 |
T |
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| Q |
207 |
tagaaatatgtgctctaaacc |
227 |
Q |
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| T |
14416303 |
tcgaaatatgtgttccaaacc |
14416283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 14426533 - 14426494
Alignment:
| Q |
17 |
aggtggaattctaaaagggtgatttgaataattgggacaa |
56 |
Q |
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| T |
14426533 |
aggttgaattctaaaagggtgatttgaataattgggacaa |
14426494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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