View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3834_low_9 (Length: 249)

Name: NF3834_low_9
Description: NF3834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3834_low_9
NF3834_low_9
[»] chr8 (9 HSPs)
chr8 (1-235)||(42456844-42457078)
chr8 (89-153)||(16677120-16677184)
chr8 (67-159)||(40832890-40832982)
chr8 (64-149)||(9780358-9780443)
chr8 (1-140)||(5920784-5920923)
chr8 (1-33)||(44327489-44327521)
chr8 (13-104)||(31645145-31645236)
chr8 (92-158)||(38753823-38753889)
chr8 (89-125)||(38137459-38137495)
[»] chr3 (9 HSPs)
chr3 (13-158)||(39028104-39028249)
chr3 (1-158)||(51380940-51381093)
chr3 (1-153)||(54524927-54525079)
chr3 (92-158)||(35442657-35442723)
chr3 (91-158)||(48723331-48723398)
chr3 (54-132)||(29570344-29570422)
chr3 (1-150)||(31984382-31984529)
chr3 (44-125)||(2395836-2395918)
chr3 (4-125)||(27844620-27844741)
[»] chr2 (13 HSPs)
chr2 (1-158)||(5357566-5357723)
chr2 (1-158)||(27249757-27249914)
chr2 (1-158)||(11915387-11915544)
chr2 (9-126)||(29923867-29923984)
chr2 (89-149)||(29699587-29699647)
chr2 (94-149)||(12037297-12037352)
chr2 (1-158)||(25271727-25271884)
chr2 (53-126)||(4964113-4964186)
chr2 (2-58)||(29699525-29699581)
chr2 (53-124)||(29927731-29927802)
chr2 (95-149)||(42013368-42013422)
chr2 (53-125)||(14389319-14389392)
chr2 (21-77)||(12037358-12037414)
[»] chr7 (4 HSPs)
chr7 (1-158)||(2729803-2729955)
chr7 (85-154)||(5897644-5897713)
chr7 (53-111)||(24972945-24973003)
chr7 (61-149)||(6687764-6687853)
[»] chr4 (9 HSPs)
chr4 (6-155)||(21512002-21512151)
chr4 (22-158)||(24699386-24699522)
chr4 (9-160)||(43148843-43148992)
chr4 (2-160)||(9672094-9672252)
chr4 (1-158)||(18489601-18489757)
chr4 (9-126)||(45073216-45073330)
chr4 (93-158)||(12868411-12868476)
chr4 (60-125)||(55583740-55583806)
chr4 (99-159)||(28752839-28752899)
[»] chr5 (3 HSPs)
chr5 (1-158)||(9379188-9379345)
chr5 (24-154)||(10315699-10315829)
chr5 (100-159)||(37283757-37283816)
[»] chr1 (7 HSPs)
chr1 (21-153)||(22023123-22023256)
chr1 (1-158)||(68909-69064)
chr1 (82-158)||(28108100-28108176)
chr1 (1-77)||(36979751-36979827)
chr1 (101-160)||(46916026-46916085)
chr1 (99-159)||(25993128-25993188)
chr1 (65-147)||(46878155-46878237)
[»] chr6 (9 HSPs)
chr6 (1-160)||(27176942-27177101)
chr6 (5-160)||(33629342-33629496)
chr6 (6-159)||(21610998-21611151)
chr6 (1-157)||(2285578-2285734)
chr6 (96-159)||(20771614-20771677)
chr6 (53-126)||(33929923-33929996)
chr6 (91-159)||(3445453-3445521)
chr6 (1-118)||(10498119-10498236)
chr6 (52-124)||(34205927-34205999)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42456844 - 42457078
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||||||||||||||  || |||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42456844 cttctaacaaggctgaaatacatcagaaaaagacgtaattgtccatcgacaattaactaccgtcggttaaaatccatcaacagctaattaccgatgaggt 42456943  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttcttgttccttaccccttcgcctcttttattgggctcaatgtca 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42456944 tatattggtaaattactggtgtttcctagcattaagtgaagtgtgaacaacattcttcttgttccttaccccttcgccccttttattgggctcaatgtca 42457043  T
Q  201 tttagcccaacaatattgtctttatcattggaccc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  42457044 tttagcccaacaatattgtctttatcattggaccc 42457078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 16677120 - 16677184
Alignment:
Q  89 taccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacat 153  Q
    ||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||||    
T  16677120 taccgatgaggttatgtaggtaaattactggtgtttcctagcattgagtgaagtgtgaacaacat 16677184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 40832982 - 40832890
Alignment:
Q  67 ttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttct 159  Q
    ||||||| |||| |||| ||| ||||||||||||||||||||||||||||| || ||| |||  ||| |||||||||||||||| ||| ||||    
T  40832982 ttaaaattcatcgacaggtaactaccgatgaggttatattggtaaattactagtatttcctaatatttagtgaagtgtgaacaatattattct 40832890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 9780443 - 9780358
Alignment:
Q  64 cggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaaca 149  Q
    |||||||||| ||||  ||| ||| || |||||| ||||||||| |||||||||  | |||||||||||| |||||||||||||||    
T  9780443 cggttaaaattcatcggcagttaactatcgatgatgttatattgataaattacttatattttctagcattgagtgaagtgtgaaca 9780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 5920784 - 5920923
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||||||||||||| |||| || ||||||||||||||| |||| || ||   |||| |   ||| ||||||||  |||   || ||| | |||||||| |    
T  5920784 cttctaacaaggctaaaacacagcagaaaaatacgtaaatgtctattggccgttaattgttgccagttaaaatatatcggaagttaactgccgatgagat 5920883  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaa 140  Q
    |||||||||||| ||||||||||| |||||||| ||||||    
T  5920884 tatattggtaaagtactggtgtttcctagcattgagtgaa 5920923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44327489 - 44327521
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaata 33  Q
    |||||||||||||||||||||||||||||||||    
T  44327489 cttctaacaaggctgaaacgcaccagaaaaata 44327521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 31645236 - 31645145
Alignment:
Q  13 ctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttata 104  Q
    ||||||| ||||||||||  | |||| || ||||||| | |||||| ||| |||||||||||||||  ||| ||| | ||||||||||||||    
T  31645236 ctgaaacacaccagaaaatgaagtaaatgaccatcggcagttaactgccgtcggttaaaatccatcggcagttaagtgccgatgaggttata 31645145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 38753823 - 38753889
Alignment:
Q  92 cgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    |||| ||||||||||| |||||||||  |||||  ||||||| ||| |||||||| |||||||||||    
T  38753823 cgataaggttatattgataaattactaatgtttcttagcattgagtcaagtgtgagcaacattcttc 38753889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 38137495 - 38137459
Alignment:
Q  89 taccgatgaggttatattggtaaattactggtgtttt 125  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  38137495 taccgatgaggttatatttgtaaattactggtatttt 38137459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 39028249 - 39028104
Alignment:
Q  13 ctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaa 112  Q
    ||||||| ||||||||||| |||||| ||| |||||| | |||||| |||||||||||||| |||| |||| ||||| ||||| |||||||||| |||||    
T  39028249 ctgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccgccggttaaaattcatcgacagttaattgccgataaggttatatttgtaaa 39028150  T
Q  113 ttactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||    
T  39028149 ttactagtgttttctagcattgattgaagtgtgaacaacattcttc 39028104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 51381093 - 51380940
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||| |||||||||||||| ||||||||||| ||||||  | |||| |    |||||| ||||| ||||||||||||| || | ||| ||||||||| ||    
T  51381093 cttcaaacaaggctgaaacacaccagaaaaagacgtaaacgcccatag----ttaactgccgccagttaaaatccatcgactgttaactaccgatgatgt 51380998  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  51380997 tatattgataaattactagtgtttcctagcattgagtgaagtgtgaacaacattcttc 51380940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 54525079 - 54524927
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||| ||||||||||| |||||||||||  ||||| |||| || || | |||||| |||||||||||| ||||||||||| ||| | ||||||||||    
T  54525079 cttctaagaaggctgaaacacaccagaaaaaatcgtaaatgtctattggcagttaactgccgccggttaaattccatcaacagttaactgccgatgaggt 54524980  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacat 153  Q
    |||||| |||||| ||| || ||| ||| |||| |||||||||||||||||||    
T  54524979 tatattagtaaataactagtatttcctaacattgagtgaagtgtgaacaacat 54524927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 35442723 - 35442657
Alignment:
Q  92 cgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||||||||||||||    
T  35442723 cgatgaggttacattggtaaattatcagtgttttctagcattgagtgaagtgtgaacaacattcttc 35442657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 48723398 - 48723331
Alignment:
Q  91 ccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    |||||||| |||||||||||||||||  ||||||  ||||||| ||||||||||||||||||||||||    
T  48723398 ccgatgagattatattggtaaattaccagtgtttcatagcattgagtgaagtgtgaacaacattcttc 48723331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 29570422 - 29570344
Alignment:
Q  54 taactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttttctagcat 132  Q
    |||||||||||||||||||||||||| ||| ||| | ||||||||||||| ||||||  |||  ||||||||| |||||    
T  29570422 taactaccgccggttaaaatccatcagcagttaactgccgatgaggttattttggtattttagaggtgttttccagcat 29570344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31984382 - 31984529
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||| ||||||| |||||   |||||||||| || ||| |||||||| | | |||||| |||||||||||||| ||||  | | ||| | || |||| ||    
T  31984382 cttcaaacaaggttgaaatataccagaaaaa-acataaatgtccatcagcagttaactgccgccggttaaaattcatcggcggttaactgcctatgatgt 31984480  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaa 150  Q
    |||||| |||||||| |||||||| |||||||| |||||||| |||||||    
T  31984481 tatatttgtaaatta-tggtgtttcctagcattgagtgaagtttgaacaa 31984529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 2395836 - 2395918
Alignment:
Q  44 catcggaaattaactaccgccggttaaaa-tccatcaacagctaattaccgatgaggttatattggtaaattactggtgtttt 125  Q
    |||||| | ||||||  |||||||||||| ||||||  ||| ||| ||||||||||| ||||||||||||| ||| |||||||    
T  2395836 catcggcagttaactgtcgccggttaaaaatccatcggcagttaactaccgatgaggctatattggtaaataacttgtgtttt 2395918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 27844620 - 27844741
Alignment:
Q  4 ctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttat 103  Q
    ||||||||| |||||  ||| |||||||||||||| | ||||||   | |||||| ||| |||||||||| ||||   || ||| | |||||||  ||||    
T  27844620 ctaacaaggttgaaatacacaagaaaaatacgtaaatatccatctacagttaactgccgtcggttaaaattcatcggtagttaactgccgatgaaattat 27844719  T
Q  104 attggtaaattactggtgtttt 125  Q
    |||| |||||||||| ||||||    
T  27844720 attgataaattactgatgtttt 27844741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 5357566 - 5357723
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||||||||||||||| ||| ||||||| |||||| |||||||||  | ||||||   |||||||||| |||||| |||| ||| | ||||||||||    
T  5357566 cttctaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaactgttgccggttaaattccatcgacagttaactgccgatgaggt 5357665  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||||||||||||| |||||||  | |||| ||||||||||||||||||||||||    
T  5357666 tatattggtaaattactagtgtttttcaacattgagtgaagtgtgaacaacattcttc 5357723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27249757 - 27249914
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||| |||||||||||||| |||| |||||| | |||| |||||||||| | |||||| ||||| |||||||||||||    | ||| |   ||||| ||    
T  27249757 cttcaaacaaggctgaaacacaccggaaaaagatgtaaatgtccatcggcagttaactgccgcctgttaaaatccatcggtggttaactgatgatgaagt 27249856  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||| ||||||||| |||||| ||| |||| ||||||||||||||||||||||||    
T  27249857 tatattgataaattactagtgtttcctaacattgagtgaagtgtgaacaacattcttc 27249914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 11915387 - 11915544
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||||||| ||||||| ||||||||||| | |||| ||| |||||  | |||||||| ||||||||||||||||||||   ||| | || || || |    
T  11915387 cttctaacaagactgaaacacaccagaaaaaaatgtaaatgttcatcgacagttaactactgccggttaaaatccatcaacgattaactgccaataagat 11915486  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||  ||||||| | ||||||| || |||| |||||| |||||||||||||||||    
T  11915487 tatatttataaattattagtgttttttatcattgagtgaaatgtgaacaacattcttc 11915544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 29923867 - 29923984
Alignment:
Q  9 aaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattgg 108  Q
    ||||||||||| || |||||||| || ||| |||  ||||  | |||||| |||||||||||||||||||| ||  ||| | |||||||||||||||| |    
T  29923867 aaggctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaattaactgccgatgaggttatattag 29923966  T
Q  109 taaattactggtgttttc 126  Q
    ||||||||||||||||||    
T  29923967 taaattactggtgttttc 29923984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 29699587 - 29699647
Alignment:
Q  89 taccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaaca 149  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||||    
T  29699587 taccgatgaggttatattggtaaattactagtgtttcctaacattgagtgaagtgtgaaca 29699647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 12037352 - 12037297
Alignment:
Q  94 atgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaaca 149  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  12037352 atgaggttatattgataaattactggtgtttcctagcattgagtgaagtgtgaaca 12037297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 25271884 - 25271727
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||| |||||||||||||| || |||||||| ||||||  ||| |||||   |||||| |||| | ||||||| ||||  ||| ||| ||||||  | ||    
T  25271884 cttcaaacaaggctgaaacacatcagaaaaagacgtaaaggtctatcggcggttaactgccgctgtttaaaattcatcggcagttaactaccgacaaagt 25271785  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    |||||   ||||||||| ||||||||||  ||  ||||||||||||||||||||||||    
T  25271784 tatatgaataaattactagtgttttctaatatcgagtgaagtgtgaacaacattcttc 25271727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 4964113 - 4964186
Alignment:
Q  53 ttaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttttc 126  Q
    |||||||| | |||||||||||||| | ||| ||| | |||||||| ||||||| |||||||||||||||||||    
T  4964113 ttaactactgtcggttaaaatccattagcagttaactgccgatgagattatattagtaaattactggtgttttc 4964186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 29699525 - 29699581
Alignment:
Q  2 ttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaact 58  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||||| | ||||||    
T  29699525 ttctaacaaggctgaaacacaccagaaaaagacgtaaatgtccatcggcagttaact 29699581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 29927802 - 29927731
Alignment:
Q  53 ttaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttt 124  Q
    ||||||| || |||||||||||||||| ||| ||| | ||||||||||||||||||||| ||  ||||||||    
T  29927802 ttaactatcgtcggttaaaatccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgttt 29927731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 42013422 - 42013368
Alignment:
Q  95 tgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaaca 149  Q
    |||| ||| |||| |||||||||||||||| |||||||| ||||||| |||||||    
T  42013422 tgagattaaattgataaattactggtgtttcctagcattgagtgaagcgtgaaca 42013368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 14389392 - 14389319
Alignment:
Q  53 ttaactaccgccggttaaaa-tccatcaacagctaattaccgatgaggttatattggtaaattactggtgtttt 125  Q
    |||||| | ||||||||||| || |||  ||| ||| ||| |||||||||||||| ||||||||||||||||||    
T  14389392 ttaactgctgccggttaaaaatcaatcggcagttaactactgatgaggttatattagtaaattactggtgtttt 14389319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 12037414 - 12037358
Alignment:
Q  21 caccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccat 77  Q
    ||||||||||| |||||| ||| ||| || | |||||||||| ||||||||||||||    
T  12037414 caccagaaaaagacgtaaatgttcattggcagttaactaccgtcggttaaaatccat 12037358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2729803 - 2729955
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||||||||||||||| || |||||||| |||||| |||||||||| | |||||| || || ||||||||||||| | || |||    |||||||||    
T  2729803 cttctaacaaggctgaaacacaacagaaaaagacgtaaatgtccatcggcagttaactgccaccagttaaaatccatcgatagttaacagtcgatgaggt 2729902  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||||     ||||||||||| |||||||| ||||||||||||||||||||||||    
T  2729903 tatattgg-----tactggtgtttcctagcattgagtgaagtgtgaacaacattcttc 2729955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 5897644 - 5897713
Alignment:
Q  85 taattaccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacatt 154  Q
    ||||| ||||||| ||||||||| ||||||||||||||||  ||||||  |||||| |||||||||||||    
T  5897644 taattgccgatgaagttatattgataaattactggtgtttcttagcatcgagtgaaatgtgaacaacatt 5897713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 24973003 - 24972945
Alignment:
Q  53 ttaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaa 111  Q
    ||||||||||||||||||||||||||  ||| ||| |  |||||| |||||||||||||    
T  24973003 ttaactaccgccggttaaaatccatcggcagttaactgtcgatgatgttatattggtaa 24972945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 6687764 - 6687853
Alignment:
Q  61 cgccggttaaaa-tccatcaacagctaattaccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaaca 149  Q
    |||||||||||| | ||||  ||| ||||| |||||||  |||||| |||||||| ||||||||| | | |||| |||||||||||||||    
T  6687764 cgccggttaaaaattcatcggcagttaattgccgatgaaattatataggtaaattgctggtgtttcccatcattgagtgaagtgtgaaca 6687853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 21512151 - 21512002
Alignment:
Q  6 aacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatat 105  Q
    ||||||| |||||| ||||||||||| |||||| |||||||| | | |||||| | ||||||||||||  |||||||| ||| | ||||| | |||||||    
T  21512151 aacaaggatgaaacacaccagaaaaagacgtaaatgtccatcagcagttaactgcagccggttaaaattgatcaacagttaactgccgataaagttatat 21512052  T
Q  106 tggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattc 155  Q
    || ||||||| | |||||| |||||||| |||||||||||||||||||||    
T  21512051 tgataaattagtagtgtttcctagcattgagtgaagtgtgaacaacattc 21512002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 24699386 - 24699522
Alignment:
Q  22 accagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtg 121  Q
    |||||||||| |||||| |||||||||  | |||||| ||||| |||||||||||||  ||| ||| ||||||||| ||||| ||| ||||||||| |||    
T  24699386 accagaaaaagacgtaaatgtccatcgccagttaactgccgccagttaaaatccatcggcagttaactaccgatgatgttatgttgataaattactagtg 24699485  T
Q  122 ttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||| |||| ||| | ||||||||||| ||||||||||    
T  24699486 tttcctagaattgattgaagtgtgaagaacattcttc 24699522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 43148992 - 43148843
Alignment:
Q  9 aaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattgg 108  Q
    ||||||||||| ||||||||||| |||||| || |  || | | |||||| | | ||||| ||||||||| |||  ||| | ||||||||||||||||||    
T  43148992 aaggctgaaacacaccagaaaaaaacgtaaatgacattcagtatttaactgctgtcggttgaaatccatcgacaattaactgccgatgaggttatattgg 43148893  T
Q  109 taaattactggtgttttctagcattaagtgaagtgtgaacaacattcttctt 160  Q
    |||| |  ||||||||||||||||||| |||||||||||||||||| |||||    
T  43148892 taaaat--tggtgttttctagcattaactgaagtgtgaacaacattattctt 43148843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 9672252 - 9672094
Alignment:
Q  2 ttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggtt 101  Q
    ||||||||| |||||||| || |||||||| ||| || || ||||||| | ||||||  || ||||||||||||||  || | ||| | ||||||| |||    
T  9672252 ttctaacaatgctgaaacacatcagaaaaagacgaaaatgcccatcggtagttaactgtcgtcggttaaaatccattgactgttaactgccgatgaagtt 9672153  T
Q  102 atattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttctt 160  Q
    ||||||| |||||||   | ||| ||||||||||||||||| |||||||||||||||||    
T  9672152 atattgggaaattaccaatatttcctagcattaagtgaagtatgaacaacattcttctt 9672094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 18489757 - 18489601
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||||||||||| |||||  ||||||||||| || ||| |||| |||  |  |||||| ||| |||||||||||||||| ||| ||| | |||||||  |    
T  18489757 cttctaacaaggttgaaatacaccagaaaaagacataaatgtctatcacag-ttaactgccgtcggttaaaatccatcagcagttaactgccgatgaaat 18489659  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||||||||||||| ||||||  || |||| |||||||| |||||||||||||||    
T  18489658 tatattggtaaattactagtgtttcttaacattgagtgaagtatgaacaacattcttc 18489601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 45073330 - 45073216
Alignment:
Q  9 aaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattgg 108  Q
    |||| |||||| ||| ||||||| | |||| |||||||||| | |||||| ||||||||||||||||||   | | ||| |  |||| ||||||||||||    
T  45073330 aaggttgaaacacactagaaaaagatgtaaatgtccatcggcagttaactgccgccggttaaaatccat---cggttaactgtcgataaggttatattgg 45073234  T
Q  109 taaattactggtgttttc 126  Q
    ||||||||||||||||||    
T  45073233 taaattactggtgttttc 45073216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 12868476 - 12868411
Alignment:
Q  93 gatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    |||||| |||||||| |||||||||  ||||||||| |||| ||||||||||||||||||||||||    
T  12868476 gatgagattatattgataaattactaatgttttctaacattgagtgaagtgtgaacaacattcttc 12868411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 55583806 - 55583740
Alignment:
Q  60 ccgccggttaaaa-tccatcaacagctaattaccgatgaggttatattggtaaattactggtgtttt 125  Q
    ||||||||||||| ||||||||||  ||| |||| ||| ||||||||||||||||||||| ||||||    
T  55583806 ccgccggttaaaaatccatcaacaattaactaccaatggggttatattggtaaattactgatgtttt 55583740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 28752899 - 28752839
Alignment:
Q  99 gttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttct 159  Q
    ||||||||||||||||| |||| |||  || |||| |||||||||||||||||||| ||||    
T  28752899 gttatattggtaaattaatggtatttcttaccattgagtgaagtgtgaacaacattattct 28752839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 9379345 - 9379188
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||| ||||||||||  ||||||||||| || ||| |   |||||  |||||||| |||||||||||||| |||| |||| |||  |||||||| ||    
T  9379345 cttctaagaaggctgaaatacaccagaaaaagacataaattctcatcgataattaactgccgccggttaaaattcatcgacagttaacaaccgatgaagt 9379246  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||| ||||||||||  |||||| |||||  ||||||||||||| ||||||||||    
T  9379245 tatattgataaattactgtagttttcaagcatcgagtgaagtgtgaataacattcttc 9379188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 10315829 - 10315699
Alignment:
Q  24 cagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgtt 123  Q
    |||||||| |||||| || ||||||| | |||| | ||||  ||||||||  |||  ||| ||| | |||||||||||||||| |||||||| |||||||    
T  10315829 cagaaaaagacgtaaatgcccatcggcagttaattgccgcgtgttaaaatttatcggcagttaactgccgatgaggttatattagtaaattattggtgtt 10315730  T
Q  124 ttctagcattaagtgaagtgtgaacaacatt 154  Q
    |   |||||| ||||||||||||||||||||    
T  10315729 tctcagcattgagtgaagtgtgaacaacatt 10315699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 37283757 - 37283816
Alignment:
Q  100 ttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttct 159  Q
    |||||||| ||||||||| |||||| |||||||| |||||||||||||||||||| ||||    
T  37283757 ttatattgataaattactcgtgtttcctagcattgagtgaagtgtgaacaacatttttct 37283816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 22023256 - 22023123
Alignment:
Q  21 caccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaa-tccatcaacagctaattaccgatgaggttatattggtaaattactgg 119  Q
    |||||| |||| |||||||||||| |||  | ||||||  || ||||||||| ||||||  ||| ||| | ||||||||||||||| |||||||||||||    
T  22023256 caccagtaaaagacgtaattgtccgtcgacagttaactgtcgtcggttaaaaatccatcggcagttaactgccgatgaggttatataggtaaattactgg 22023157  T
Q  120 tgttttctagcattaagtgaagtgtgaacaacat 153  Q
    ||||||| |||||| |||||||||||||||||||    
T  22023156 tgttttccagcattgagtgaagtgtgaacaacat 22023123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 68909 - 69064
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||||||  ||||||| ||| ||||||  |||||| |||| ||||  | ||||||  || |||||||||| ||||| ||  ||| ||||||||| ||    
T  68909 cttctaacaaaactgaaacacactagaaaag-acgtaaatgtctatcgacagttaactgtcgtcggttaaaattcatca-cacttaactaccgatgatgt 69006  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    ||||||| ||||||||| |||| | |||||||| ||||||||||||||||||||||||    
T  69007 tatattgataaattactagtgtgtcctagcattgagtgaagtgtgaacaacattcttc 69064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 28108176 - 28108100
Alignment:
Q  82 agctaattaccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttc 158  Q
    |||||| | ||||||| ||||||||||||||||||| |||||| |||| | | ||||||||||||||||||||||||    
T  28108176 agctaactgccgatgaagttatattggtaaattactagtgtttcctagtactgagtgaagtgtgaacaacattcttc 28108100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36979751 - 36979827
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccat 77  Q
    |||||||||| |||||||| ||||||||||| |||||| |||  ||||| |||||| | |||||| |||||||||||    
T  36979751 cttctaacaaagctgaaacacaccagaaaaagacgtaaatgttaatcggcaattaattgccgccgattaaaatccat 36979827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 46916026 - 46916085
Alignment:
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttctt 160  Q
    |||||||||||||||||||||||| ||| |||  |||||| ||||||||||||| |||||    
T  46916026 tatattggtaaattactggtgtttcctatcatcgagtgaaatgtgaacaacattattctt 46916085  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 25993128 - 25993188
Alignment:
Q  99 gttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttct 159  Q
    ||||||||  |||||||||  ||||||||| |||| | |||||||||||||||||||||||    
T  25993128 gttatatttataaattacttatgttttctaacattgaatgaagtgtgaacaacattcttct 25993188  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 46878237 - 46878155
Alignment:
Q  65 ggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaa 147  Q
    ||||||||| |||| | || ||| | ||||| || |||||||  ||||||| |||||||| |||||||| |||||||||||||    
T  46878237 ggttaaaattcatcgatagttaactgccgataagattatatttataaattattggtgtttcctagcattgagtgaagtgtgaa 46878155  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 27177101 - 27176942
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||||||||||  |||||| ||  ||||||| |||||| ||| |||||  | |||||| |||||| ||||||| |||| | || ||| | ||||||||||    
T  27177101 cttctaacaagattgaaacacattagaaaaagacgtaaatgttcatcgacagttaactgccgccgattaaaattcatcgatagttaactgccgatgaggt 27177002  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttctt 160  Q
    ||||||  |||||||||| |||||| ||| ||| |||||||||| ||||||||| |||||    
T  27177001 tatattaataaattactgatgttttttagtattgagtgaagtgtaaacaacattattctt 27176942  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 33629496 - 33629342
Alignment:
Q  5 taacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttata 104  Q
    ||||||||||||||| || |||||||| |||||| |||| | ||  | |||||| ||  |||  |||||| |||| ||| |||| |  |||||| |||||    
T  33629496 taacaaggctgaaacacatcagaaaaagacgtaaatgtctagcgtcagttaactgccatcggcaaaaatcaatcagcagttaat-attgatgagattata 33629398  T
Q  105 ttggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttctt 160  Q
    |||||||||||||  ||||| |||||||| ||||||||||||||||||||||||||    
T  33629397 ttggtaaattactattgtttcctagcattgagtgaagtgtgaacaacattcttctt 33629342  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 21611151 - 21610998
Alignment:
Q  6 aacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatat 105  Q
    |||| ||||||||| ||  ||||||| |||||| ||| |||||  | ||||||  || |||||||||| ||||    | ||| ||||||| | |||||||    
T  21611151 aacatggctgaaacacattagaaaaagacgtaaatgttcatcgatagttaactgtcgtcggttaaaattcatcggttgttaactaccgataaagttatat 21611052  T
Q  106 tggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttct 159  Q
    || ||||||||| || |||||||| ||| |||||||||||||||||||||||||    
T  21611051 tgataaattactagtattttctagtattgagtgaagtgtgaacaacattcttct 21610998  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 2285578 - 2285734
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    |||| ||||||| |||||| ||  ||||||| |||||| |||||||| | | |||||||| | |||||||||| |||| | |   || |  |||||| ||    
T  2285578 cttcaaacaaggttgaaacacattagaaaaagacgtaaatgtccatcagcagttaactactgtcggttaaaattcatcgataatcaactgtcgatgaagt 2285677  T
Q  101 tatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattctt 157  Q
    ||||||| |||||||    |||||  |||||||||||||||||||||||||||||||    
T  2285678 tatattgataaattatcaatgtttcatagcattaagtgaagtgtgaacaacattctt 2285734  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 20771677 - 20771614
Alignment:
Q  96 gaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttct 159  Q
    |||||||||||| |||||| || || |||||||||||| ||||||||||||||||||| |||||    
T  20771677 gaggttatattgataaatttctagtattttctagcattgagtgaagtgtgaacaacatccttct 20771614  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 33929923 - 33929996
Alignment:
Q  53 ttaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttttc 126  Q
    |||| ||| |||||||||||||||||  ||| ||| ||||||||||  ||||||| ||||||||||||||||||    
T  33929923 ttaattactgccggttaaaatccatcggcagttaactaccgatgagagtatattgataaattactggtgttttc 33929996  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 3445453 - 3445521
Alignment:
Q  91 ccgatgaggttatattggtaaattactggtgttttctagcattaagtgaagtgtgaacaacattcttct 159  Q
    |||||||  |||||||| ||||||||| || ||| ||||||||  ||||||||||||||||||||||||    
T  3445453 ccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 3445521  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 10498119 - 10498236
Alignment:
Q  1 cttctaacaaggctgaaacgcaccagaaaaatacgtaattgtccatcggaaattaactaccgccggttaaaatccatcaacagctaattaccgatgaggt 100  Q
    ||||||| || | |||||| || |||||||| |||||| ||| |||||  | |||||| || ||| ||||||| |||| |||| ||| |    |||||||    
T  10498119 cttctaataaagttgaaacacatcagaaaaagacgtaaatgttcatcgacagttaactgccaccgtttaaaattcatcgacagttaactgtaaatgaggt 10498218  T
Q  101 tatattggtaaattactg 118  Q
    ||||||||||||||||||    
T  10498219 tatattggtaaattactg 10498236  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 34205999 - 34205927
Alignment:
Q  52 attaactaccgccggttaaaatccatcaacagctaattaccgatgaggttatattggtaaattactggtgttt 124  Q
    |||||||||||| | |||||||||||| |||| ||| | ||||||| ||||||||| ||  ||| ||||||||    
T  34205999 attaactaccgctgattaaaatccatcgacaggtaactgccgatgatgttatattgatattttagtggtgttt 34205927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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