View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3835_high_1 (Length: 575)

Name: NF3835_high_1
Description: NF3835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3835_high_1
NF3835_high_1
[»] chr1 (3 HSPs)
chr1 (1-565)||(17535245-17535809)
chr1 (223-482)||(26407375-26407634)
chr1 (127-188)||(26407675-26407736)
[»] scaffold0051 (1 HSPs)
scaffold0051 (273-565)||(37961-38252)
[»] chr5 (1 HSPs)
chr5 (223-482)||(27209405-27209664)
[»] chr4 (2 HSPs)
chr4 (223-482)||(26900992-26901251)
chr4 (127-188)||(26900890-26900951)
[»] chr3 (4 HSPs)
chr3 (223-482)||(23675489-23675748)
chr3 (223-482)||(24047765-24048024)
chr3 (127-188)||(23675789-23675850)
chr3 (127-188)||(24048065-24048126)


Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 17535245 - 17535809
Alignment:
Q  1 ttatgacattgtggcttgcctttgttccagcaatctttctcttcatgagtgttcttcttacagatgccacaccatttatttgagcctccaaaatgtcctc 100  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17535245 ttatgacattgtggcttacctttgatccaacaatctttctcttcatgagtgttcttcttacagatgccacaccatttatttgagcctccaaaatgtcctc 17535344  T
Q  101 gtcctccataggtgcctcttccttttccacgagagtttccgcctcttcctcggcctctagaaaatctgccacctctagaagactcaccattattttggga 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17535345 gtcctccataggtgcctcttcctcttccacgagagtttccgcctcttccacggcctctagaaaatataccacctctagaagactcaccattattttggga 17535444  T
Q  201 catcattttctcattatttggttgaatggtgagcttggattgaaaggcactttcaactgacttttcattgcgtcgtgataacctttgctcataggatcta 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17535445 catcattttctcattatttggttgaatggtgagcttggactgaaacgcactttcaactgacttttcattgcgtcgtgataacctttgctcataggatcta 17535544  T
Q  301 agtgaccccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaa 400  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  17535545 agtgaccccatcagcccttggacaatcatggttgatagatccttagtttcttctataacagccaccataggatcatatttttcaatcaaacaaattaaaa 17535644  T
Q  401 ttttatcaacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagtactcattcaaactttcatt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17535645 ttttatcaacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagtactaattcaaactttcatt 17535744  T
Q  501 ttctttcattttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17535745 ttctttcattttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg 17535809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 223 - 482
Target Start/End: Complemental strand, 26407634 - 26407375
Alignment:
Q  223 tgaatggtgagcttggattgaaaggcactttcaactgacttttcattgcgtcgtgataacctttgctcataggatctaagtgaccccatcagcccttgga 322  Q
    |||||| |||| || |||||||||||||| |||| ||| ||||||    ||||| | | ||||||||| |||||||| |  |||||||||| |||||| |    
T  26407634 tgaatgttgagtttagattgaaaggcactctcaattgatttttcagaatgtcgtaacatcctttgctcgtaggatctcaaagaccccatcaacccttgaa 26407535  T
Q  323 cagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttatcaacaattctacgatc 422  Q
     ||||| ||||||||||||||| ||||||||||| ||| |||||||  | ||| || || |  ||||||| || | |||||| ||||||||||| |||||    
T  26407534 tagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgtcaacaattctgcgatc 26407435  T
Q  423 ttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta 482  Q
    ||| || ||||| ||||| || ||||| || |||||||| || | |||||| || |||||    
T  26407434 ttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta 26407375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 26407736 - 26407675
Alignment:
Q  127 ccacgagagtttccgcctcttcctcggcctctagaaaatctgccacctctagaagactcacc 188  Q
    ||||| |||||||  ||||| |||| ||||||   |||||||||||||||||||||||||||    
T  26407736 ccacgtgagtttcgacctctgcctctgcctcttccaaatctgccacctctagaagactcacc 26407675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 273 - 565
Target Start/End: Original strand, 37961 - 38252
Alignment:
Q  273 tcgtgataacctttgctcataggatctaagtgaccccatcagcccttggacagtcatggttgatagatccttagtttcttctataacagccaccatatga 372  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37961 tcgtgataacctttgctcatatgatctaagtgaccccatcagcccttggaaagtcatggttgatagatccttagtttcttctataacagccaccatagga 38060  T
Q  373 tcatatttttcaatcaaactaattaaaattttatcaacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtc 472  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38061 tcatatttttcaatcaagctaattaaaattttatcaacaattctacgatcttcaattgtatctccatgagatttcatttggttcaccaaatcagcgagtc 38160  T
Q  473 tattaaagtactcattcaaactttcattttctttcattttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg 565  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38161 tattaaagtactcattcaaactttcattttcttt-attttttcgttctcaaaatctcttttaagagacataagtttgactgttctcacctttg 38252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 223 - 482
Target Start/End: Original strand, 27209405 - 27209664
Alignment:
Q  223 tgaatggtgagcttggattgaaaggcactttcaactgacttttcattgcgtcgtgataacctttgctcataggatctaagtgaccccatcagcccttgga 322  Q
    |||||| |||| || |||||||||||||| |||| ||| ||||||    ||||| | | ||||||||| |||||||| |  |||||||||| |||||| |    
T  27209405 tgaatgttgagtttagattgaaaggcactctcaattgatttttcagaatgtcgtaacatcctttgctcgtaggatctcaaagaccccatcaacccttgaa 27209504  T
Q  323 cagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttatcaacaattctacgatc 422  Q
     ||||| ||||||||||||||| ||||||||||| ||| |||||||  | ||| || || |  ||||||| || | |||||| ||||||||||| |||||    
T  27209505 tagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgtcaacaattctgcgatc 27209604  T
Q  423 ttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta 482  Q
    ||| || ||||| ||||| || ||||| || |||||||| || | |||||| || |||||    
T  27209605 ttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta 27209664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 223 - 482
Target Start/End: Original strand, 26900992 - 26901251
Alignment:
Q  223 tgaatggtgagcttggattgaaaggcactttcaactgacttttcattgcgtcgtgataacctttgctcataggatctaagtgaccccatcagcccttgga 322  Q
    |||||| |||| || |||||||||||||| |||| ||| ||||||    ||||| | | ||||||||| |||||||| |  |||||||||| |||||| |    
T  26900992 tgaatgttgagtttagattgaaaggcactctcaattgatttttcagaatgtcgtaacatcctttgctcgtaggatctcaaagaccccatcaacccttgaa 26901091  T
Q  323 cagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttatcaacaattctacgatc 422  Q
     ||||| ||||||||||||||| ||||||||||| ||| |||||||  | ||| || || |  ||||||| || | |||||| ||||||||||| |||||    
T  26901092 tagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgtcaacaattctgcgatc 26901191  T
Q  423 ttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta 482  Q
    ||| || ||||| ||||| || ||||| || |||||||| || | |||||| || |||||    
T  26901192 ttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta 26901251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 26900890 - 26900951
Alignment:
Q  127 ccacgagagtttccgcctcttcctcggcctctagaaaatctgccacctctagaagactcacc 188  Q
    ||||| |||||||  ||||| |||| ||||||   |||||||||||||||||||||||||||    
T  26900890 ccacgtgagtttcgacctctgcctctgcctcttccaaatctgccacctctagaagactcacc 26900951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 223 - 482
Target Start/End: Complemental strand, 23675748 - 23675489
Alignment:
Q  223 tgaatggtgagcttggattgaaaggcactttcaactgacttttcattgcgtcgtgataacctttgctcataggatctaagtgaccccatcagcccttgga 322  Q
    |||||| |||| || |||||||||||||| |||| ||| ||||||    ||||| | | ||||||||| |||||||| |  |||||||||| |||||| |    
T  23675748 tgaatgttgagtttcgattgaaaggcactctcaattgatttttcagaatgtcgtaacatcctttgctcgtaggatctcaaagaccccatcaacccttgaa 23675649  T
Q  323 cagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttatcaacaattctacgatc 422  Q
     ||||| ||||||||||||||| ||||||||||| ||| |||||||  | ||| || || |  ||||||| || | |||||| ||||||||||| |||||    
T  23675648 tagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgtcaacaattctgcgatc 23675549  T
Q  423 ttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta 482  Q
    ||| || ||||| ||||| || ||||| || |||||||| || | |||||| || |||||    
T  23675548 ttctatcgtatcaccatgcgacttcatctgattcaccaactcggagagtctgttgaagta 23675489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 223 - 482
Target Start/End: Complemental strand, 24048024 - 24047765
Alignment:
Q  223 tgaatggtgagcttggattgaaaggcactttcaactgacttttcattgcgtcgtgataacctttgctcataggatctaagtgaccccatcagcccttgga 322  Q
    |||||| |||| || |||||||||||||| |||| ||| ||||||    ||||| | | ||||||||| |||||||| |  |||||||||| |||||| |    
T  24048024 tgaatgttgagtttcgattgaaaggcactctcaattgatttttcagaatgtcgtaacatcctttgctcgtaggatctcaaagaccccatcaacccttgaa 24047925  T
Q  323 cagtcatggttgatagatccttagtttcttctataacagccaccatatgatcatatttttcaatcaaactaattaaaattttatcaacaattctacgatc 422  Q
     ||||| ||||||||||||||| ||||||||||| ||| |||||||  | ||| || || |  ||||||| || | |||||| ||||||||||| |||||    
T  24047924 tagtcaaggttgatagatccttggtttcttctatcacacccaccattgggtcaaatcttgctgtcaaactgatcagaattttgtcaacaattctgcgatc 24047825  T
Q  423 ttcaattgtatctccatgagatttcatttggttcaccaaatcagtgagtctattaaagta 482  Q
    ||| || ||||| ||||| || ||||| || |||||||| || | |||||| || |||||    
T  24047824 ttctatcgtatcaccatgtgacttcatctgattcaccaactcggagagtctgttgaagta 24047765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 23675850 - 23675789
Alignment:
Q  127 ccacgagagtttccgcctcttcctcggcctctagaaaatctgccacctctagaagactcacc 188  Q
    ||||| |||||||  ||||| |||| ||||||   |||||||||||||||||||||||||||    
T  23675850 ccacgtgagtttcgacctctgcctctgcctcttccaaatctgccacctctagaagactcacc 23675789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 24048126 - 24048065
Alignment:
Q  127 ccacgagagtttccgcctcttcctcggcctctagaaaatctgccacctctagaagactcacc 188  Q
    ||||| |||||||  ||||| |||| ||||||   |||||||||||||||||||||||||||    
T  24048126 ccacgtgagtttcgacctctgcctctgcctcttccaaatctgccacctctagaagactcacc 24048065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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