View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3835_high_4 (Length: 431)
Name: NF3835_high_4
Description: NF3835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3835_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 5302498 - 5302889
Alignment:
| Q |
17 |
acatttgtttgtggtgaacatagcatctcattccttttaccccataaaaagtagtacagtcctacaatgatcaaaaccatgcctagcaacctgtaaacaa |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302498 |
acatttgtttgtggtgaacatggcatctcattccttttaccccataaaaagtagtacaatcctacaatgatcaaaaccatgcctagcaacctgtaaacaa |
5302597 |
T |
|
| Q |
117 |
attatcgaattagtgattgaaccgattaaaccatgatcatgatatctcactggtttgatctttggtccgattttaaatttttatattttctaatttgatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
5302598 |
attatcgaattagtgattgaaccgattaaaccatgatcatgatatctcactggtttgatatttggtccaatttttaatttttatattttctaatttgatg |
5302697 |
T |
|
| Q |
217 |
aaggaaaagtattcttacgttccaactttgagtggttcaccaagtatgaaagcttctgatatggcaacaaaaactagacaaagtggattgaacattggag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302698 |
aaggaaaagtattcttacgttccaactttgagtggttcaccaagtatgaaagcttctgaaatggcaacaaaaactagacaaagtggattgaacattggag |
5302797 |
T |
|
| Q |
317 |
gataactaggtcccttgattgtgattgcccatgatagtaaacaaaatgttgctgcagttgccaatgctccctgcacaaaatttaatccaaat |
408 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
5302798 |
gataactaggtcccttgattgtgatcgcccatgatagtaaacaaaatgttgcagcagtagccaatgctccctacacaaaattaaatccaaat |
5302889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 216 - 392
Target Start/End: Original strand, 38850607 - 38850783
Alignment:
| Q |
216 |
gaaggaaaagtattcttacgttccaactttgagtggttcaccaagtatgaaagcttctgatatggcaacaaaaactagacaaagtggattgaacattgga |
315 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||||||||||| | |||||||| | |||||||||||| || ||||||||||||||||| | |
|
|
| T |
38850607 |
gaaggaaaagtattcatacgttccaaccgttagtggttcaccaagtatcatagcttctgcaaaggcaacaaaaacaagtgcaagtggattgaacattgaa |
38850706 |
T |
|
| Q |
316 |
ggataactaggtcccttgattgtgattgcccatgatagtaaacaaaatgttgctgcagttgccaatgctccctgcac |
392 |
Q |
| |
|
|| ||| ||||||||||||| || |||||||||||| ||||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
38850707 |
gggtaagtaggtcccttgatagtcattgcccatgattgtaaacaaaatactgcagcagtagacaatgctccctgcac |
38850783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 388
Target Start/End: Original strand, 29222680 - 29222849
Alignment:
| Q |
219 |
ggaaaagtattcttacgttccaactttgagtggttcaccaagtatgaaagcttctgatatggcaacaaaaactagacaaagtggattgaacattggagga |
318 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||| | |||||||||||||||||| |
|
|
| T |
29222680 |
ggaaaaatattcatacgttccaactttgagtggttcaccaagtatgatagtgtcagatatggcaacgaaaacaagagccaatggattgaacattggaggg |
29222779 |
T |
|
| Q |
319 |
taactaggtcccttgattgtgattgcccatgatagtaaacaaaatgttgctgcagttgccaatgctccct |
388 |
Q |
| |
|
|| |||||||||| ||| | |||||||||| ||||||||||||||| || || || ||||||||||||| |
|
|
| T |
29222780 |
aaagtaggtcccttaattttaattgcccatgttagtaaacaaaatgtagcagctgtagccaatgctccct |
29222849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 29148188 - 29148018
Alignment:
| Q |
225 |
gtattcttacgttccaactttgagtggttcaccaagtatgaaagcttctgatatggcaacaaaaactagacaaagtggattgaacattggaggataacta |
324 |
Q |
| |
|
|||||| ||||||||||| | | ||||| |||||||||| ||| |||||||||||||| |||| ||| | ||||| ||||| ||||| ||| || |
|
|
| T |
29148188 |
gtattcatacgttccaacccttaacggttcgccaagtatgatagcctctgatatggcaacgaaaataagagccaacggattaaacatcggagggtaagta |
29148089 |
T |
|
| Q |
325 |
ggtcccttgattgtgattgcccatgatagtaaacaaaatgttgctgcagttgccaatgctccctgcacaaa |
395 |
Q |
| |
|
||||| || || || |||||||||||||||||||||||||| || ||||| ||||||||||||| |||||| |
|
|
| T |
29148088 |
ggtcctttaatggtaattgcccatgatagtaaacaaaatgtagcagcagtagccaatgctccctacacaaa |
29148018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 29148332 - 29148270
Alignment:
| Q |
43 |
ctcattccttttaccccataaaaagtagtacagtcctacaatgatcaaaaccatgcctagcaa |
105 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
29148332 |
ctcattccttttcccccatagaaagtagtacaatcccattatgatcaaaaccatgcctagcaa |
29148270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 29222532 - 29222602
Alignment:
| Q |
39 |
gcatctcattccttttaccccataaaaagtagtacagtcctacaatgatcaaaaccatgcctagcaacctg |
109 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||| ||||| || |||||||||||||||| ||||||| |
|
|
| T |
29222532 |
gcatttcattccttttaccccacaaaaaatagtacaatcctattataatcaaaaccatgcctaacaacctg |
29222602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 38850086 - 38850156
Alignment:
| Q |
39 |
gcatctcattccttttaccccataaaaagtagtacagtcctacaatgatcaaaaccatgcctagcaacctg |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||| || ||||||||||| ||||| | ||||||| |
|
|
| T |
38850086 |
gcatctcattccttttaccccatagaaagctgcacagtcccactatgatcaaaactatgcccaacaacctg |
38850156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University