View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3836_high_1 (Length: 721)
Name: NF3836_high_1
Description: NF3836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3836_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 323 - 708
Target Start/End: Complemental strand, 38025749 - 38025370
Alignment:
| Q |
323 |
tgatcaacaattatatcatctggcttcattgcaccaaatacaaatctatgtgataagttgatgctagaacctatcccacaacaattaagcatctttcttt |
422 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38025749 |
tgatctacaattatatcatctggcttcattgcaccaaatacaaatttgtgtgataagttgatgctagaacctatcccacaacaattaagcatctttcttt |
38025650 |
T |
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| Q |
423 |
tgtatgtttcaatcaaattcaaaattggaagaaaatttggaatgtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtatactttt |
522 |
Q |
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| T |
38025649 |
tgtatgtctcaatcaaattcaaaattggaagaaaatttggaatgtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtatactttt |
38025550 |
T |
|
| Q |
523 |
attgataacaaatttacactactccatctattcggtcctaatacacaatcatctacttcaatttcaatagttctgttttaacttttaaacactcagctca |
622 |
Q |
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| T |
38025549 |
attgataacaaatttacactactccatctattcggtcttaatacacaatcatctactt------caatagttctgttttaacttttaaacactcagctca |
38025456 |
T |
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| Q |
623 |
agaatatttatcacgaacaaattaatcaagatgtggtaagtttttgttgatagaaaatttaaagtactaccatctgatcatcataa |
708 |
Q |
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| T |
38025455 |
aaaatatttatcacgaacaaattaatcaagatgtggtaagtttttgttgatagcaaatttaaagtactaccatctgatcatcataa |
38025370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 43 - 460
Target Start/End: Complemental strand, 38032789 - 38032371
Alignment:
| Q |
43 |
acaagaagcaagttattatacgtcaaaccaacacggttttcatctaaattttcttcattcttattttctttatctttgtcctctcattcacctttttaaa |
142 |
Q |
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| T |
38032789 |
acaagaagcaagttattttatgtcacaccaacacggtcttcatctaaattttcttcattcttattttctttatctttgtcctctcattcccctttttaaa |
38032690 |
T |
|
| Q |
143 |
aaataaacaaacgatcctgtgaatat----gcccattctcaacactgatgtaggactcaacaactttataccaattttagaaattgtttttgctttggcc |
238 |
Q |
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| T |
38032689 |
aaacaaacaaacgatcttgtgaatatatatgcccattttcaacactgatgtaggactcaaca-ctttataccaattttagaaattgcttttgctttggcc |
38032591 |
T |
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| Q |
239 |
tctgttacttgaataatagttcttgtttctccccttatccagtaaccaatgtatccccagatctatttgtgtaagagggtccaatgatcaacaattatat |
338 |
Q |
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| T |
38032590 |
tctgttacttgaataatagttcttgtttctccccttatccagtaaccaatgtatccccagatctatttgtgtaagagggtccattgatcaacaattatat |
38032491 |
T |
|
| Q |
339 |
catctggcttcattgcaccaaatacaaatctatgtgataagttgatgctagaacctatcccacaacaattaagcatctttcttttgt---atgtttcaat |
435 |
Q |
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| T |
38032490 |
catctggcttcattgcaccaaata-----ctatgcgataagttgatgctagaacttatcccacaataattaagcatctttcttttgttaaatgtctcaat |
38032396 |
T |
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| Q |
436 |
caaattcaaaattggaagaaaattt |
460 |
Q |
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| T |
38032395 |
caaattcaaaattggaagaaaattt |
38032371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 38025921 - 38025746
Alignment:
| Q |
12 |
atcatcaatattaacaagattttgctcgtcgacaagaagcaagttattatacgtcaaaccaacacggttttcatctaaattttcttcattcttattttct |
111 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38025921 |
atcaacaatattaacaagattttgctcgtcaacaagaagcaagttattatacgtcaaaccaacacggtcttcatctaaattttcttcattcttattttct |
38025822 |
T |
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| Q |
112 |
ttatctttgtcctctcattcacctttttaaaaaataaacaaacgatcctgtgaatatgcccattctcaacactgat |
187 |
Q |
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| T |
38025821 |
ttatctttgtcctctcattcacctttttaaaaaataaacaaacgatcttgtgaatatgcccattttcagcactgat |
38025746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 460 - 549
Target Start/End: Complemental strand, 38032270 - 38032176
Alignment:
| Q |
460 |
tggaatgtaaattcacatcacaaaatttatcacacaaattatggtatagtcta-----gtatacttttattgataacaaatttacactactccat |
549 |
Q |
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| T |
38032270 |
tggaaagtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtaatgtatacttttattgatagcaaatttacactactccat |
38032176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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