View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3836_high_2 (Length: 431)
Name: NF3836_high_2
Description: NF3836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3836_high_2 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 4355105 - 4354692
Alignment:
| Q |
9 |
agatgaagaaaaggaggaaaatag----gaataacagaaagtgggttgatgggtgaaaaaagaggaggaaaagaagaaaagtgaatagtaatagtatatg |
104 |
Q |
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| T |
4355105 |
agatgaagaaaaggaggaatatatataagaagaacagaaagtgggttgacgggtaaaaaaagaggaggaaaagaagaaaagtgaatagtaatagtatatg |
4355006 |
T |
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| Q |
105 |
tttgtagctttgaggagaaggcgtgtatttataactacgaagccctggccttgtatcccttgcttatcaagtaacaaatcnnnnnnnaataaaattagga |
204 |
Q |
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| T |
4355005 |
tttgtagctttgaggagaaggcgtgtatttataactacgaagccctggccttgtatcccttgcttatcaagtaacaaatctttttttaataaaattagga |
4354906 |
T |
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| Q |
205 |
acaaatcttctctcaaaatattttgtaacaaannnnnnnctttgaaaataatccctttccaaatctcaatataagttacctataaaaacaaagatatgct |
304 |
Q |
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| T |
4354905 |
acaaatcttctctcaaaatattttgtaacaaatttttttctttgaaaataatccctttccaaatctcaatataagttgcctataaaaacaaagatatgct |
4354806 |
T |
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| Q |
305 |
tatctatactatatgtgcgaagaaacttaaccataacaaacaatta----atcttttgacaaaagtaagaaataaaaataaaattgtaacaaacttttgt |
400 |
Q |
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| T |
4354805 |
tatctatactatatgtgcgaagaaacttaaccataacaaacaattaatatatcttttgacaaaagtaagaaataaaaaaaaaattgtaacaaac-tttgt |
4354707 |
T |
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| Q |
401 |
ttaggggaaaatttt |
415 |
Q |
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| T |
4354706 |
ttaggggaaaatttt |
4354692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 4675807 - 4675896
Alignment:
| Q |
9 |
agatgaagaaaaggaggaaaatag----gaataacagaaagtgggttgatgggtgaaaaaagaggaggaaaagaagaaaagtgaatagta |
94 |
Q |
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| T |
4675807 |
agatgaagaaaaggaggaatatatataagaagaacagaaagtgggttgacgggtaaaaaaagaggaggaaaagaagaaaagtgaatagta |
4675896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 368
Target Start/End: Original strand, 4676131 - 4676248
Alignment:
| Q |
247 |
tgaaaataatccctttccaaatctcaatataa-gttacctataaaaacaaagatatgcttatctatactatatgtgcgaagaaacttaaccataacaaac |
345 |
Q |
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| T |
4676131 |
tgaaaataatccctttccaaatctcaatataacccaaaaaaaaaaaacaaagatatgcttat-----gtatatgtgttaacaaactgaatcgtaacaaac |
4676225 |
T |
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| Q |
346 |
aattaatcttttgacaaaagtaa |
368 |
Q |
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| T |
4676226 |
aattaatcttttgacaaaagtaa |
4676248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 4675969 - 4676017
Alignment:
| Q |
136 |
taactacgaagccctggccttgtatcccttgcttatcaagtaacaaatc |
184 |
Q |
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| T |
4675969 |
taactacgaagacctagccttatatcacttgcttatcaagtaacaaatc |
4676017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 20630 - 20677
Alignment:
| Q |
101 |
tatgtttgtagctttgaggagaaggcgtgtatttataactacgaagcc |
148 |
Q |
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| T |
20630 |
tatgtttgtagctttgacgagaaggcgtgtatttataactacgaagcc |
20677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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