View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3836_high_3 (Length: 408)
Name: NF3836_high_3
Description: NF3836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3836_high_3 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 181 - 375
Target Start/End: Complemental strand, 12537266 - 12537076
Alignment:
| Q |
181 |
agagcattgttacaagataaccataggttaaccttcaatacagaatataaaaacaacatcaaaatcataaaccaaaccctaatttt-atttgacattgaa |
279 |
Q |
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|||||||||||| |||||||| |||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
12537266 |
agagcattgttaaaagataacaataggttaactttcattacagaatattaaaactacatcaaaatcataaaccaaaccctaatttttatttgacagtgaa |
12537167 |
T |
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| Q |
280 |
actaaacataaccctaactaagaaatacaaccaacacctatattatagatcaagaagcacagtaaccaaatctaagccctctcgcctctgattctg |
375 |
Q |
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| T |
12537166 |
actaaacatagccctaactaagaaccacaaccaacacctata-----gatcttgaagcaccgtaaccaaatctaagccctctcgcctctgattctg |
12537076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 109 - 408
Target Start/End: Original strand, 12546735 - 12547027
Alignment:
| Q |
109 |
caaataaaattgacaattattaacaaagatcttaggaaaatgatattcaattcaattaagaaacagtagaaaagagcattgttacaagataaccataggt |
208 |
Q |
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| T |
12546735 |
caaataaaattgacaattattaacaaagaacataggaaaatgatattcaattcaattaagaaacagtagaacagagcattgtcacaagataaccatgggt |
12546834 |
T |
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| Q |
209 |
taaccttcaataca-gaatataaaaacaacatcaaaatcataaaccaaaccctaattttatttgacattgaaactaaacataaccctaactaagaaatac |
307 |
Q |
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| T |
12546835 |
taaccttcacaacataaaaatataaaaaacaacataaccagaatctgaaccctatttttgttagacagagaaattaaacctaaaactaactaagaaccac |
12546934 |
T |
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| Q |
308 |
aaccaacacctatattatagatcaagaagcacagtaaccaaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagt |
407 |
Q |
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| T |
12546935 |
aagcacca-gtagaacttggatcatga-------taaccaaatctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagt |
12547026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 12531658 - 12531592
Alignment:
| Q |
342 |
taaccaaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagta |
408 |
Q |
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| T |
12531658 |
taaccaaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagta |
12531592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 9894804 - 9894755
Alignment:
| Q |
346 |
caaatctaagccctctcgcctctgattctgcgagcgagttgaatatcctt |
395 |
Q |
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| T |
9894804 |
caaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt |
9894755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 12538760 - 12538698
Alignment:
| Q |
346 |
caaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagta |
408 |
Q |
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| T |
12538760 |
caaatctaagcactcttgcctctgattatgcgagtgagttgaatacctttaggcatgatagta |
12538698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 9866624 - 9866685
Alignment:
| Q |
347 |
aaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagta |
408 |
Q |
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| T |
9866624 |
aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagta |
9866685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 24860702 - 24860653
Alignment:
| Q |
352 |
taagccctctcgcctctgattctgcgagcgagttgaatatccttaggcat |
401 |
Q |
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| T |
24860702 |
taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcat |
24860653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 38807153 - 38807096
Alignment:
| Q |
351 |
ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagta |
408 |
Q |
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| T |
38807153 |
ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagta |
38807096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 43479645 - 43479695
Alignment:
| Q |
351 |
ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcat |
401 |
Q |
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| T |
43479645 |
ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcat |
43479695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 13576509 - 13576448
Alignment:
| Q |
347 |
aaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagta |
408 |
Q |
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| T |
13576509 |
aaatctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagta |
13576448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 3929931 - 3929989
Alignment:
| Q |
350 |
tctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagta |
408 |
Q |
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| T |
3929931 |
tctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagta |
3929989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 21320239 - 21320195
Alignment:
| Q |
352 |
taagccctctcgcctctgattctgcgagcgagttgaatatcctta |
396 |
Q |
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| T |
21320239 |
taagccctctcacctctgattatgcaagcaagttgaatatcctta |
21320195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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