View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3836_high_5 (Length: 253)
Name: NF3836_high_5
Description: NF3836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3836_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4783076 - 4783309
Alignment:
| Q |
1 |
ttactatttatttgttaagtggttataaaatctttcaaggtttcactgccttagggatcaagcaaacaaggacacgtacgataattgttgaaaattgtcc |
100 |
Q |
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| T |
4783076 |
ttactatttatttgttaagtggttataaaatctttcaaggtttcactgccttagggatcaagcaaacaaggacacg----ataattgttgaaaattgtcc |
4783171 |
T |
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| Q |
101 |
aatgatcaaacaactgatatattcaccaagtctatcaaaaaggtccatattttaaaactgagaagaaagctaggtgttgtagcttttgaaagtttaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783172 |
aatgatcaaacaactgatatattcaccaagtctatcaaaaaggtccatattttaaaactgagaagaaagctaggtgttgtagcttttgaaagtttaaatt |
4783271 |
T |
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| Q |
201 |
aagaaagcatgttgagattaataattcaagcttaggtg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4783272 |
aagaaagcatgttgagattaataattcaagcttaggtg |
4783309 |
T |
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