View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3836_low_6 (Length: 248)
Name: NF3836_low_6
Description: NF3836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3836_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 8404102 - 8404336
Alignment:
| Q |
3 |
tgttcaatccagtaattttctttggacatggccaccacctagatgcttcaaatttggaaggaaatttcgcaatcattgcacctcctaacaaaggaagtgg |
102 |
Q |
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| T |
8404102 |
tgttctatctagtcattttcttttgacatggccaccacatagatgcttcaaatttggatggaaatttctcaatcattgcacctcctaataaaggaagtgg |
8404201 |
T |
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| Q |
103 |
ataggctttatcaagagccaaaaccttctcaattgcatccctcacatcatcttcactgtgattattattaccaagtgatagtttggtttggatttgccta |
202 |
Q |
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| T |
8404202 |
ataggctttatcaagagccaaaaccttctcaattgcatccctcacatcatcttcactgtgattattattaccaagtgatagtttggtttggatttgtcta |
8404301 |
T |
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| Q |
203 |
cgaagttgtttaaagagttttgtagcgttcctttg |
237 |
Q |
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| T |
8404302 |
cgaagttgtttaaagagttttgtagcgttcctttg |
8404336 |
T |
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