View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3837_high_1 (Length: 475)
Name: NF3837_high_1
Description: NF3837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3837_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 36465497 - 36465036
Alignment:
| Q |
1 |
aataaataaaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaagg |
100 |
Q |
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| T |
36465497 |
aataaataaaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaagg |
36465398 |
T |
|
| Q |
101 |
acttttatacttgtcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatt |
200 |
Q |
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| T |
36465397 |
acttttatacttctcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatt |
36465298 |
T |
|
| Q |
201 |
tttaaagtatcatttcactattaaaatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaac |
300 |
Q |
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| T |
36465297 |
tttaaagtatcatttctctattaaaatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaac |
36465198 |
T |
|
| Q |
301 |
ttgaggcaaagacatccaacacttgacctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttg |
400 |
Q |
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| T |
36465197 |
ttgaggcaaagacacccaacacttgacctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttg |
36465098 |
T |
|
| Q |
401 |
cttttaatgtcatttttcctgactggatgataacatctttgatactaatatttttcacaggt |
462 |
Q |
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| T |
36465097 |
cttttaatgtcatttttcctgactggatgataacatctttgatactaatatttttcacaggt |
36465036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 149 - 458
Target Start/End: Complemental strand, 36474548 - 36474218
Alignment:
| Q |
149 |
ctttctaaccaatataacacgtgctacatgttgtcttagtgt---gtgtcctattttt---aaagtatcatttcactattaaaatagataacatggatt- |
241 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||| | | ||||||| ||||||||||||| ||||||||||| ||| ||||||| |
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| T |
36474548 |
ctttctaaccaatataacatgtgctatatgttgtcttagtgtttcttataatatttttgtcaaagtatcatttctctattaaaatacgtaatatggattg |
36474449 |
T |
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| Q |
242 |
------------tttgtttgtttg--gtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacatccaacacttgac |
327 |
Q |
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| T |
36474448 |
aatgcatatgtgtttgtttgtttggtgtgaagtcatgattactggtggagcaggagcaactgttttatacaacttgaagaaaagacacccaacacttgac |
36474349 |
T |
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| Q |
328 |
ctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttgcttttaatgtcatttttcctgactgga |
427 |
Q |
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| T |
36474348 |
ctgcctgtgattgactatgatttagcacttcttttccaaccaatgttaatgcttggaatcagtcttggtgttgctttcaatctcattttccctgactgga |
36474249 |
T |
|
| Q |
428 |
tgataacatctttgatactaatatttttcac |
458 |
Q |
| |
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|| ||||| ||||| || | ||||||||||| |
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| T |
36474248 |
tgttaacaactttgctaatcatatttttcac |
36474218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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