View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3837_high_2 (Length: 471)
Name: NF3837_high_2
Description: NF3837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3837_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 28647552 - 28647789
Alignment:
| Q |
16 |
caattgttaggtgtccaaagattaattttgcaaagtacagttaaaggcccaaatcataacagtccaaagttcaacgtaggg--agcttaaaagtgtaatt |
113 |
Q |
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| T |
28647552 |
caattgttaggtgtccaaagattaattttgcaaagtatagttaaaggcccaaatcataacagtccaaagttcaacgtagggggagcttaaaagtgtaatt |
28647651 |
T |
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| Q |
114 |
acaagttttgttttaaaaaacgtaattagagagaactaaacctaaattatctcttttaaatttcaaaacaaactgcaaaaaatacatcaagaacagcatt |
213 |
Q |
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| T |
28647652 |
acaagttttgttttaaaaaacgtaattagagagaactaaacctaaattatctcttttaaatttcaaaacaaactgcaaaaaatacatcaagaacagcatt |
28647751 |
T |
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| Q |
214 |
cggtgtgcgcggtgcggtgtgtcgtacatggttgatgt |
251 |
Q |
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| T |
28647752 |
cggtgtgcgcggtgcggtgtgtcgtacatggttgatgt |
28647789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 320 - 459
Target Start/End: Original strand, 28647858 - 28647997
Alignment:
| Q |
320 |
tgaagaagggttcagctgctatactctatcattacccttgtcctgatggagtttttgccgctctcgctgtacacctttacttcaaagccacttccttact |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| |
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| T |
28647858 |
tgaagaagggttcagctgctatactctatcattacccttgtcctgatggagtttttgccgctcttgccgcacacctttacttcaaagccacttccttact |
28647957 |
T |
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| Q |
420 |
ctctcctcttttctttcccaacactgtctattctcctctc |
459 |
Q |
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| T |
28647958 |
ctctcctcttttctttcccaacactgtctattctcctctc |
28647997 |
T |
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