View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3837_low_11 (Length: 233)

Name: NF3837_low_11
Description: NF3837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3837_low_11
NF3837_low_11
[»] chr4 (3 HSPs)
chr4 (20-221)||(30768960-30769161)
chr4 (42-118)||(29195095-29195171)
chr4 (42-105)||(5795422-5795485)
[»] chr2 (2 HSPs)
chr2 (42-105)||(32106566-32106629)
chr2 (60-118)||(30359672-30359730)
[»] chr1 (6 HSPs)
chr1 (41-92)||(952510-952561)
chr1 (42-92)||(37046985-37047035)
chr1 (42-90)||(34228874-34228922)
chr1 (54-105)||(4824983-4825034)
chr1 (42-92)||(15581167-15581217)
chr1 (42-87)||(1690108-1690153)
[»] chr7 (4 HSPs)
chr7 (42-92)||(48125200-48125250)
chr7 (42-118)||(22760863-22760940)
chr7 (42-105)||(7801180-7801243)
chr7 (59-92)||(46279031-46279064)
[»] chr5 (2 HSPs)
chr5 (42-92)||(16773807-16773857)
chr5 (41-92)||(19373238-19373289)
[»] chr8 (3 HSPs)
chr8 (40-105)||(26688863-26688928)
chr8 (42-92)||(22268959-22269009)
chr8 (42-94)||(11979252-11979304)
[»] chr3 (3 HSPs)
chr3 (43-92)||(18316524-18316573)
chr3 (42-94)||(3054994-3055046)
chr3 (44-92)||(42799773-42799821)
[»] chr6 (1 HSPs)
chr6 (40-88)||(28028528-28028576)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 30768960 - 30769161
Alignment:
Q  20 ggacgtagattaatttgtgctcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtcgcagttcgattcta 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||    
T  30768960 ggacgtagattaatttgtgctcaacccacttgaattggtcaggtggagttgacttgggaccttggagtgtacttctcatcaaggtcgcagttcgattcta 30769059  T
Q  120 gggtttgtttgattttttctcacaggtttattttatactccaagtacttttatgcttaattttcttcttctaagggtttgtttgattgttttctcacagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769060 gggtttgtttgattttttctcacaggtttattttatactccaagtacttttatgcttaattttcttcttctaagggtttgtttgattgttttctcacagg 30769159  T
Q  220 tt 221  Q
    ||    
T  30769160 tt 30769161  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 29195095 - 29195171
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtcgc-agttcgattct 118  Q
    ||||||||||  |||| ||||||| |||| |||||||||||||||||||| |||  |||||||||| |||||||||||    
T  29195095 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgc-tcctctcaaggtcgcaagttcgattct 29195171  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 5795485 - 5795422
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtc 105  Q
    ||||||||||  |||||||||||| |||||||||| |||||||||| |||| | | ||||||||    
T  5795485 aacccacttgggttggtctggtggtgttgacttggcaccttggagtatgctcctcctcaaggtc 5795422  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 32106566 - 32106629
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtc 105  Q
    ||||||||||  |||| ||||||| |||||||||||||||||||||||||| ||  ||||||||    
T  32106566 aacccacttgggttggcctggtggtgttgacttgggaccttggagtgtgctccctctcaaggtc 32106629  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 30359672 - 30359730
Alignment:
Q  60 tggtggagttgacttgggaccttggagtgtgcttcccttcaaggtcgcagttcgattct 118  Q
    |||||| |||| ||||||||||||||||||||| | | |||||||| || |||||||||    
T  30359672 tggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcatttcgattct 30359730  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 952510 - 952561
Alignment:
Q  41 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    |||||||||||| |||||||||||| |||| |||||||||| ||||||||||    
T  952510 caacccacttgagttggtctggtggtgttggcttgggacctgggagtgtgct 952561  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 37046985 - 37047035
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    ||||||||||  |||||||||||| |||| |||||||||||||||||||||    
T  37046985 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgct 37047035  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 34228874 - 34228922
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtg 90  Q
    ||||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  34228874 aacccacttgagttggtctggtggtgttggcttgggacctcggagtgtg 34228922  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 4824983 - 4825034
Alignment:
Q  54 ttggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtc 105  Q
    |||||||| ||| |||| ||||||||||||||||||||| | ||||||||||    
T  4824983 ttggtctgatggtgttggcttgggaccttggagtgtgctcctcttcaaggtc 4825034  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 15581217 - 15581167
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    ||||||||||  |||| ||||||| |||| |||||||||||||||||||||    
T  15581217 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 15581167  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 1690153 - 1690108
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagt 87  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||    
T  1690153 aacccacttgaattggtctggtggtattggcttgggacctgggagt 1690108  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 48125250 - 48125200
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    ||||||||||  |||||||||||| |||| |||||||||||||||||||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgct 48125200  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 22760863 - 22760940
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtcgca-gttcgattct 118  Q
    ||||||||||  ||||||||||||  |||||||||||||| |||||||||| | | |||||||| || ||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattct 22760940  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 7801180 - 7801243
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtc 105  Q
    ||||||||||  |||| |||||||  |||||||||||||| |||||||||| | ||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtc 7801243  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 46279031 - 46279064
Alignment:
Q  59 ctggtggagttgacttgggaccttggagtgtgct 92  Q
    |||||||||||||||| |||||||||||||||||    
T  46279031 ctggtggagttgactttggaccttggagtgtgct 46279064  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 16773807 - 16773857
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    ||||||||||| ||||||||||||  |||||||||||||| ||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgct 16773857  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 19373238 - 19373289
Alignment:
Q  41 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    |||||||||||| |||| ||||||| |||| |||| ||||||||||||||||    
T  19373238 caacccacttgagttggcctggtggtgttggcttgagaccttggagtgtgct 19373289  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 26688863 - 26688928
Alignment:
Q  40 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttcccttcaaggtc 105  Q
    ||||||||||||  |||| ||||||| |||| ||||||||||||||||||||| | | ||||||||    
T  26688863 tcaacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtc 26688928  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 22269009 - 22268959
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    ||||||||||  |||| ||||||| |||| |||||||||||||||||||||    
T  22269009 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 22268959  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 11979252 - 11979304
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttc 94  Q
    ||||||||||  ||||| ||| || ||||||||||||||||| ||||||||||    
T  11979252 aacccacttgggttggtttggcggtgttgacttgggaccttgaagtgtgcttc 11979304  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 18316573 - 18316524
Alignment:
Q  43 acccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    |||||||||  |||||||||||| | || |||||||||||||||||||||    
T  18316573 acccacttgggttggtctggtggtgctggcttgggaccttggagtgtgct 18316524  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 3054994 - 3055046
Alignment:
Q  42 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttc 94  Q
    ||||||||||  |||| ||||||| |||| ||||||||||||||| |||||||    
T  3054994 aacccacttgggttggcctggtggtgttggcttgggaccttggagcgtgcttc 3055046  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 42799821 - 42799773
Alignment:
Q  44 cccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 92  Q
    ||||||||  |||| ||||||| |||| |||||||||||||||||||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 42799773  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 28028528 - 28028576
Alignment:
Q  40 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtg 88  Q
    ||||||||||||  |||| ||||||| |||||||||||||||| |||||    
T  28028528 tcaacccacttgggttggcctggtggtgttgacttgggacctttgagtg 28028576  T

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