View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3837_low_3 (Length: 430)
Name: NF3837_low_3
Description: NF3837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3837_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 213 - 420
Target Start/End: Complemental strand, 39356418 - 39356211
Alignment:
| Q |
213 |
ggtgtacctatttcatttctataaaatttgaccataaggcctacttgatgattcttaccaaggtttaaaagtaccagacattggttgcaaggtcaagtgt |
312 |
Q |
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| T |
39356418 |
ggtgtacctatttcatttctgtaaaatttgaccataaggcctacttgatgattcttaccaaggtttaaaagtatcagacattggttgcaaggtcaagtgt |
39356319 |
T |
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| Q |
313 |
taaagcagagattaggagtttagaacatgctatactgcagaaattttatggcttcattcattattacgagaattaagaatcaaacatcaaactccaagtt |
412 |
Q |
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| T |
39356318 |
taaagcagagattaggagtttagaacatgctatactgcagaaattttatggcttcattcattattacgagaattaagaatcaaacatcaaactccaagtt |
39356219 |
T |
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| Q |
413 |
tctctgtg |
420 |
Q |
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| T |
39356218 |
tctctgtg |
39356211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 39356613 - 39356473
Alignment:
| Q |
18 |
gctgatttctcatgtattttcctgattttctcatgttttctcaaagttttagaaaagtagagacgtgctgaccgcattagggggaacaacatctgctaag |
117 |
Q |
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| T |
39356613 |
gctgatttctcatgtattttcctgattttctcatgttttctcaaagttttagaaaagtagagacgtgctgaccgcattagggggaacaacatctgctaag |
39356514 |
T |
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| Q |
118 |
taagaatgtgacaaatccaaacaagggtttgtatactaacc |
158 |
Q |
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| T |
39356513 |
taagagtgtgacaaatccaaacaagggtttgtatactaacc |
39356473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 235 - 420
Target Start/End: Complemental strand, 39341576 - 39341390
Alignment:
| Q |
235 |
aaaatttgaccataaggcctacttgatgattcttaccaaggtttaaaagtaccagacattggttgcaaggtcaagtgttaaagcagagattaggagttta |
334 |
Q |
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| T |
39341576 |
aaaatttgatcataaggcctacttgatgatttttaccaaggtttaaaagtattagacaatagttgcaaggtcaagtgttaaagcagagattaggaattta |
39341477 |
T |
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| Q |
335 |
gaacatgctatactgcagaaattttatggcttcattcattattacgagaattaagaatcaaacatcaaactccaa-gtttctctgtg |
420 |
Q |
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| T |
39341476 |
gaacatgctataatgcagaaattctattgcttcattcattattacgagaattaagggtcaaacatcaaactccaaggtttctctgtg |
39341390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 410
Target Start/End: Complemental strand, 39369138 - 39369025
Alignment:
| Q |
296 |
gttgcaaggtcaagtgttaaagcagagattaggagtttagaacatgct-atactgcagaaattttatggcttcattcattattacgagaattaagaatca |
394 |
Q |
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| T |
39369138 |
gttgcaaggtcaattgttgaagtagag--taagagttcagaacatgcttatgctgcagaaattctaaggcttcagtcattattgtgagaattaaggggaa |
39369041 |
T |
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| Q |
395 |
aacatcaaactccaag |
410 |
Q |
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| T |
39369040 |
aacatcaaactccaag |
39369025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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