View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3837_low_5 (Length: 288)
Name: NF3837_low_5
Description: NF3837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3837_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 21384738 - 21384477
Alignment:
| Q |
20 |
acttacctgattgctcatttcttcttctaagattccaataaagaatggcaatgatcaatagaactaaaactgatgatagtgttgcaacaatgggaacaat |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21384738 |
acttacctgattgttcatttcttcttctaagattccaataaagaatggcaatgatcaatagaactaaaactgatgatagtgttgcaacaatgggaacaat |
21384639 |
T |
|
| Q |
120 |
tgccttctttgtgtcacttttatttgagtctgagagatttatatcatccaccctataaatatgttcaaaacaagattttatggtcaaaattacacctaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21384638 |
tgccttctttgtgtcacttttatttgagtcagagagatttatatcatccaccctataaatatgttcaaaacaagattttctggtcaaaattacacctaaa |
21384539 |
T |
|
| Q |
220 |
gatacttgatgactcttctacacatcttgacatacttcattcttgcactgtggctttctttcc |
282 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21384538 |
gatacttgatgact-ttctacacatcttgacatacttcattcttgcactgtggctttctttcc |
21384477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 34446402 - 34446137
Alignment:
| Q |
20 |
acttacctgattgctcatttcttcttctaagattccaataaagaatggcaatgatcaatagaactaaaa---ctgatgatagtgttgcaacaatgggaac |
116 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34446402 |
acttacctgatggttcatttcttcttctaagcttccaatagagaattgcaatgatcaatagaactaaaaaaactgatgatagtgttgcaacaatgggaac |
34446303 |
T |
|
| Q |
117 |
aattgccttctttgtgtcacttttatttgagtctgagagatttatatcatccaccctataaatatgttcaaaacaagattttatggtcaaaattacacct |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
34446302 |
aattgccttgtttgtgtcacttttatttgagtcagagagatttatatcatccaccctataaatatgtcgaaaacaagattgtctggtcaaaattacacct |
34446203 |
T |
|
| Q |
217 |
aaagatacttgatgactcttctacacatcttgacatacttcattcttgcactgtggctttctttcc |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
34446202 |
aaagatacttgatgactcttctacacatcttgacatacttcatacttgcactttggctttctttcc |
34446137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University