View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_high_11 (Length: 283)
Name: NF3838_high_11
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 43924509 - 43924765
Alignment:
| Q |
17 |
caaggtccgggatatgccactgagtccttgtatactatatatacttgacttgtatcagtttcaatacaatgaaaaataccacatatttctgcatggtatc |
116 |
Q |
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| T |
43924509 |
caaggtccgggatatgccattgagtccttgtatactatatatacttgacttgtatcagtttcaatacaatgaaaaataccacatatttctgcatggtatc |
43924608 |
T |
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| Q |
117 |
aaagcaaaagatatgaaccatcgctaaatctagtactaccacgnnnnnnnacccttgttgatcattatactctatgcactcattcttcacaaattccacc |
216 |
Q |
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| T |
43924609 |
aaagcaaaagatacgaaccatcgctaaatttagtactaccacgtttttttacccttgttgatcattacactctatgcactcattcttcacaaattccacc |
43924708 |
T |
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| Q |
217 |
tataagtacccacaaattcttcaccaattctcattccaacatctcacattctccttt |
273 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43924709 |
tataagtacccacaaattcttcacaaattctcattccaacatctcacattctccttt |
43924765 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 3221022 - 3221105
Alignment:
| Q |
187 |
tctatgcactcattcttcacaaattccac-ctataagtacccacaaattcttcaccaattctcattccaacatctcacattctc |
269 |
Q |
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|||| |||||||||||||||||||||||| |||||| |||||| ||| ||||| | ||||||||||| ||||| |||||||| |
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| T |
3221022 |
tctacgcactcattcttcacaaattccacactataaatacccattaatccttcaaaatttctcattccatcatctgacattctc |
3221105 |
T |
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