View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3838_high_18 (Length: 209)
Name: NF3838_high_18
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_high_18 |
 | |
|
| [»] scaffold0807 (1 HSPs) |
| | |
|
| [»] scaffold0216 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0807 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 3636 - 3810
Alignment:
| Q |
17 |
cataggtgctgcattccgttcatccaagcctaatgaatgttaccttttcgtgaaagaaaggtatgtgattttagattattatactttaaggaaagatctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3636 |
cataggtgctgcattccgttcatccaagcctaatgaatgttaccttttcgtgaaagaaaggtatgtgattttagattattatactttaaggaaagatctt |
3735 |
T |
|
| Q |
117 |
atcagtggtccggttgaaattgatgcaggatttccaatgttttccaaaacgatatttaaaaggggaatagattct |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3736 |
atcagtggtccggttgaaattgatgcaggatttccaatgttttccaaaacgatatttaaaaggggaatagattct |
3810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 13861 - 13700
Alignment:
| Q |
24 |
gctgcattccgttcatccaagcctaatgaatgttaccttttcgtgaaagaaaggtatgtgattttagattattatactttaaggaaagatcttatcagtg |
123 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||| | ||||| |||||||||| |
|
|
| T |
13861 |
gctgcattccgttcatccaggccatatgaatgttaccttttcgtgaaagaaaggtatgtcattttaaattatcataat------aaagaacttatcagtg |
13768 |
T |
|
| Q |
124 |
gtccggttgaaattgatgcaggatttccaatgttttccaaaacgatatttaaaaggggaatagattct |
191 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13767 |
gtccagttgatattgaagcagggtttccaatgttttccaaaacgatatttaaaaggggggtagattct |
13700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 27232111 - 27232157
Alignment:
| Q |
18 |
ataggtgctgcattccgttcatccaagcctaatgaatgttacctttt |
64 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||||| |||| |
|
|
| T |
27232111 |
ataggtgctgcatttcgttcattcaagcataatgaatgttacgtttt |
27232157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University