View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3838_high_3 (Length: 441)

Name: NF3838_high_3
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3838_high_3
NF3838_high_3
[»] chr1 (42 HSPs)
chr1 (13-189)||(42831655-42831831)
chr1 (29-189)||(52353743-52353902)
chr1 (22-189)||(43822786-43822952)
chr1 (13-158)||(47364363-47364507)
chr1 (31-189)||(11241435-11241593)
chr1 (75-189)||(44665316-44665430)
chr1 (13-189)||(13984048-13984223)
chr1 (20-108)||(27544462-27544550)
chr1 (34-189)||(36297993-36298148)
chr1 (26-189)||(47783605-47783767)
chr1 (13-189)||(25813746-25813921)
chr1 (22-189)||(43506268-43506436)
chr1 (60-189)||(38600947-38601076)
chr1 (14-189)||(11120562-11120736)
chr1 (92-186)||(11566896-11566990)
chr1 (51-189)||(32851736-32851873)
chr1 (57-189)||(51263200-51263330)
chr1 (114-189)||(11569956-11570031)
chr1 (23-95)||(43675143-43675215)
chr1 (22-100)||(38902062-38902140)
chr1 (22-176)||(51504480-51504634)
chr1 (60-189)||(23333770-23333898)
chr1 (72-189)||(51061618-51061735)
chr1 (92-182)||(9505500-9505590)
chr1 (16-177)||(27110698-27110858)
chr1 (34-186)||(14775125-14775277)
chr1 (118-186)||(38118910-38118978)
chr1 (50-182)||(49003340-49003471)
chr1 (34-105)||(33780511-33780582)
chr1 (22-71)||(26701433-26701482)
chr1 (148-189)||(31133165-31133206)
chr1 (62-98)||(24555820-24555856)
chr1 (148-188)||(33041455-33041495)
chr1 (150-189)||(641831-641870)
chr1 (52-174)||(35839063-35839185)
chr1 (33-100)||(42401098-42401165)
chr1 (64-98)||(19415390-19415424)
chr1 (135-184)||(3623108-3623157)
chr1 (60-189)||(11449232-11449360)
chr1 (156-189)||(24555864-24555897)
chr1 (33-98)||(32451717-32451782)
chr1 (33-81)||(37586435-37586483)
[»] chr5 (30 HSPs)
chr5 (23-189)||(29558347-29558512)
chr5 (22-189)||(26675427-26675593)
chr5 (22-189)||(26947035-26947201)
chr5 (25-189)||(35463177-35463342)
chr5 (49-189)||(42551054-42551195)
chr5 (13-189)||(41520800-41520976)
chr5 (60-188)||(837732-837858)
chr5 (64-189)||(1309752-1309876)
chr5 (16-189)||(1666714-1666886)
chr5 (13-186)||(8228779-8228952)
chr5 (16-184)||(12593141-12593308)
chr5 (116-189)||(15468163-15468236)
chr5 (122-189)||(42951779-42951846)
chr5 (64-189)||(4432340-4432465)
chr5 (23-139)||(2970322-2970438)
chr5 (63-174)||(33133236-33133346)
chr5 (68-184)||(34382465-34382581)
chr5 (84-189)||(3558782-3558887)
chr5 (51-140)||(11200453-11200542)
chr5 (90-189)||(13486594-13486692)
chr5 (122-189)||(14642263-14642330)
chr5 (142-189)||(20420179-20420226)
chr5 (30-189)||(22579683-22579842)
chr5 (31-182)||(11200753-11200906)
chr5 (124-189)||(6761417-6761482)
chr5 (64-141)||(6818748-6818825)
chr5 (148-189)||(7293056-7293097)
chr5 (148-189)||(13420781-13420822)
chr5 (34-78)||(4740371-4740415)
chr5 (60-108)||(42951704-42951752)
[»] chr8 (46 HSPs)
chr8 (34-189)||(23036804-23036959)
chr8 (13-179)||(1155075-1155240)
chr8 (64-189)||(2603062-2603186)
chr8 (62-187)||(11777655-11777779)
chr8 (12-179)||(7288242-7288409)
chr8 (63-213)||(23812559-23812710)
chr8 (64-189)||(9604491-9604616)
chr8 (64-189)||(28540681-28540806)
chr8 (34-189)||(18806528-18806682)
chr8 (22-189)||(31226417-31226583)
chr8 (64-189)||(6519033-6519156)
chr8 (59-184)||(30714033-30714158)
chr8 (59-184)||(30721810-30721935)
chr8 (45-189)||(35973356-35973500)
chr8 (60-189)||(31128542-31128670)
chr8 (22-189)||(4797180-4797348)
chr8 (49-189)||(5535768-5535907)
chr8 (33-189)||(13628995-13629151)
chr8 (33-189)||(13729407-13729563)
chr8 (23-188)||(28538071-28538237)
chr8 (31-187)||(35893392-35893547)
chr8 (13-183)||(37673695-37673869)
chr8 (64-189)||(3628239-3628362)
chr8 (309-426)||(23812812-23812930)
chr8 (72-189)||(16531567-16531683)
chr8 (64-189)||(28557256-28557381)
chr8 (73-189)||(12734053-12734168)
chr8 (114-189)||(6427141-6427216)
chr8 (122-189)||(9134161-9134228)
chr8 (122-189)||(36316771-36316838)
chr8 (122-184)||(5139722-5139784)
chr8 (148-189)||(10954145-10954186)
chr8 (148-189)||(10962150-10962191)
chr8 (13-78)||(4326033-4326098)
chr8 (148-189)||(5978589-5978630)
chr8 (202-249)||(23812728-23812776)
chr8 (13-81)||(23982366-23982434)
chr8 (34-182)||(38937809-38937957)
chr8 (150-189)||(1737803-1737842)
chr8 (147-189)||(23982254-23982296)
chr8 (72-162)||(43294745-43294835)
chr8 (22-87)||(13079894-13079959)
chr8 (149-189)||(5569238-5569278)
chr8 (33-105)||(9135095-9135166)
chr8 (115-175)||(9790083-9790143)
chr8 (62-106)||(30788637-30788681)
[»] chr7 (36 HSPs)
chr7 (31-189)||(31330404-31330562)
chr7 (316-403)||(17257575-17257662)
chr7 (13-184)||(36657827-36657997)
chr7 (23-189)||(47841370-47841536)
chr7 (72-189)||(6068107-6068223)
chr7 (50-189)||(43302094-43302232)
chr7 (49-189)||(4958248-4958391)
chr7 (22-182)||(19987176-19987337)
chr7 (64-189)||(23156230-23156354)
chr7 (13-189)||(29914340-29914517)
chr7 (12-189)||(36656546-36656722)
chr7 (14-189)||(5513785-5513961)
chr7 (60-189)||(36481992-36482120)
chr7 (22-189)||(39853779-39853943)
chr7 (12-96)||(31322250-31322334)
chr7 (33-189)||(44441601-44441757)
chr7 (48-189)||(48767127-48767271)
chr7 (72-189)||(36901033-36901151)
chr7 (60-178)||(41015323-41015441)
chr7 (68-189)||(38360778-38360897)
chr7 (122-187)||(13057882-13057947)
chr7 (49-186)||(48615262-48615399)
chr7 (122-189)||(2008599-2008666)
chr7 (72-183)||(17983411-17983522)
chr7 (64-179)||(46282120-46282234)
chr7 (65-189)||(25307473-25307597)
chr7 (76-189)||(37698498-37698610)
chr7 (25-80)||(19594095-19594150)
chr7 (25-80)||(19752828-19752883)
chr7 (156-189)||(19753042-19753075)
chr7 (13-182)||(38223992-38224163)
chr7 (150-189)||(4874941-4874980)
chr7 (25-87)||(30859683-30859745)
chr7 (135-188)||(41172570-41172623)
chr7 (148-189)||(44441360-44441401)
chr7 (149-189)||(46748101-46748141)
[»] chr4 (37 HSPs)
chr4 (30-189)||(10180569-10180727)
chr4 (11-189)||(12447428-12447605)
chr4 (13-178)||(26699027-26699192)
chr4 (30-189)||(44500503-44500662)
chr4 (13-189)||(35331922-35332097)
chr4 (49-189)||(35382338-35382477)
chr4 (13-189)||(39055172-39055347)
chr4 (12-187)||(2396310-2396485)
chr4 (13-189)||(52199813-52199988)
chr4 (62-189)||(23359112-23359238)
chr4 (64-189)||(39629183-39629307)
chr4 (22-189)||(35144398-35144564)
chr4 (34-141)||(42426850-42426957)
chr4 (31-189)||(35308941-35309099)
chr4 (64-189)||(822369-822493)
chr4 (64-189)||(49211037-49211163)
chr4 (66-187)||(53096599-53096720)
chr4 (34-181)||(51655145-51655295)
chr4 (118-189)||(30865901-30865972)
chr4 (13-141)||(45833907-45834033)
chr4 (59-189)||(25435888-25436017)
chr4 (126-189)||(2574100-2574163)
chr4 (60-189)||(8824973-8825098)
chr4 (30-156)||(28897635-28897759)
chr4 (67-189)||(11346990-11347116)
chr4 (60-189)||(22628478-22628607)
chr4 (34-126)||(23607426-23607518)
chr4 (102-189)||(54018476-54018563)
chr4 (60-184)||(38864966-38865086)
chr4 (122-179)||(15839720-15839777)
chr4 (22-84)||(27923166-27923228)
chr4 (13-95)||(28909418-28909500)
chr4 (22-96)||(30865978-30866051)
chr4 (160-189)||(25424376-25424405)
chr4 (150-182)||(6982484-6982516)
chr4 (47-179)||(41115866-41115998)
chr4 (150-186)||(41963674-41963710)
[»] chr3 (28 HSPs)
chr3 (60-189)||(41211993-41212122)
chr3 (30-186)||(44110843-44110999)
chr3 (22-187)||(13755100-13755262)
chr3 (22-141)||(45603382-45603501)
chr3 (13-182)||(46048900-46049070)
chr3 (118-179)||(52995695-52995756)
chr3 (22-187)||(13768501-13768663)
chr3 (13-189)||(36902262-36902437)
chr3 (13-84)||(36619273-36619344)
chr3 (24-189)||(26085077-26085232)
chr3 (116-181)||(33831981-33832046)
chr3 (65-189)||(30595071-30595195)
chr3 (64-184)||(49109047-49109167)
chr3 (127-183)||(54422740-54422796)
chr3 (13-84)||(52744658-52744729)
chr3 (13-88)||(55222601-55222676)
chr3 (33-175)||(35539614-35539755)
chr3 (43-189)||(46006047-46006191)
chr3 (148-189)||(19900204-19900245)
chr3 (60-105)||(29950771-29950816)
chr3 (60-105)||(29999925-29999970)
chr3 (148-189)||(47075620-47075661)
chr3 (64-179)||(36277750-36277866)
chr3 (150-189)||(3993581-3993620)
chr3 (77-188)||(7933215-7933326)
chr3 (59-105)||(55272863-55272909)
chr3 (34-99)||(54425526-54425591)
chr3 (152-189)||(55272818-55272855)
[»] chr2 (37 HSPs)
chr2 (13-189)||(6710810-6710985)
chr2 (65-189)||(65383-65507)
chr2 (31-179)||(11921964-11922111)
chr2 (64-189)||(34820868-34820993)
chr2 (23-185)||(26312485-26312646)
chr2 (13-189)||(36887507-36887683)
chr2 (75-190)||(18970005-18970120)
chr2 (110-189)||(44583399-44583478)
chr2 (24-189)||(3668848-3669013)
chr2 (22-179)||(16117859-16118016)
chr2 (22-172)||(36267001-36267159)
chr2 (21-189)||(6459089-6459256)
chr2 (22-86)||(15269309-15269373)
chr2 (22-189)||(34375059-34375224)
chr2 (22-189)||(9583152-9583318)
chr2 (66-165)||(17603948-17604047)
chr2 (14-189)||(32887543-32887716)
chr2 (31-189)||(9733660-9733817)
chr2 (64-174)||(30465287-30465396)
chr2 (22-182)||(37347784-37347947)
chr2 (22-82)||(14332037-14332097)
chr2 (22-159)||(28857118-28857255)
chr2 (68-173)||(41264967-41265070)
chr2 (64-189)||(5038721-5038848)
chr2 (124-188)||(40999689-40999753)
chr2 (73-136)||(17928086-17928149)
chr2 (126-189)||(44887291-44887354)
chr2 (64-177)||(37648278-37648391)
chr2 (148-189)||(13022797-13022838)
chr2 (148-189)||(34234894-34234935)
chr2 (154-189)||(6562951-6562986)
chr2 (150-189)||(39368744-39368783)
chr2 (151-189)||(41068866-41068904)
chr2 (23-84)||(3948936-3948997)
chr2 (30-87)||(31050064-31050121)
chr2 (153-189)||(3949058-3949094)
chr2 (60-108)||(8798683-8798731)
[»] chr6 (18 HSPs)
chr6 (13-184)||(387740-387911)
chr6 (62-182)||(31743548-31743668)
chr6 (22-189)||(32658373-32658539)
chr6 (13-189)||(32977310-32977486)
chr6 (31-189)||(7693878-7694037)
chr6 (49-139)||(3543259-3543349)
chr6 (13-171)||(33755768-33755925)
chr6 (52-189)||(6988186-6988322)
chr6 (117-189)||(18804218-18804290)
chr6 (13-189)||(5002307-5002484)
chr6 (70-189)||(22281763-22281881)
chr6 (90-189)||(25099087-25099186)
chr6 (60-188)||(6321634-6321760)
chr6 (28-96)||(3435991-3436059)
chr6 (90-166)||(9491626-9491702)
chr6 (64-140)||(31743386-31743462)
chr6 (31-165)||(3705676-3705810)
chr6 (42-99)||(12119735-12119792)
[»] scaffold0036 (1 HSPs)
scaffold0036 (22-140)||(63609-63727)
[»] scaffold0991 (1 HSPs)
scaffold0991 (125-189)||(2933-2997)
[»] scaffold0017 (1 HSPs)
scaffold0017 (34-189)||(31762-31916)
[»] scaffold0712 (1 HSPs)
scaffold0712 (147-189)||(6132-6174)
[»] scaffold0709 (1 HSPs)
scaffold0709 (147-189)||(6150-6192)
[»] scaffold0040 (1 HSPs)
scaffold0040 (60-140)||(55763-55842)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 42831831 - 42831655
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| ||||||||| |||| |||||||||||  ||||||  ||||||||||||||||||||||||||||||  ||||||| ||| ||| ||| |||    
T  42831831 gagacatccattttttggcacttgaatggatctcacatgtacatattactcatttataattttttaatagtagtacctaataagaactaaattcctccaa 42831732  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     ||||||| ||||| ||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||| ||||    
T  42831731 cctagcatctcacaaaaatttcttaaatgagatccattaatcaactatcaataattttatatcattacattttaatt 42831655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 52353743 - 52353902
Alignment:
Q  29 ggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacaca 128  Q
    ||||||||||||| || || |||||||| | ||| ||||||||||||||||||| ||||  |||||||||||  |||||| ||| | ||||| |||||||    
T  52353743 ggtacttaaatgggtcccacgtgtacacatcactaatttataattttttaatagcagtacctaataagcactcgatccctccaagc-agcatctcacaca 52353841  T
Q  129 aatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||  ||   ||||||||||||||||||| ||||||||||||||||||||||    
T  52353842 aatttcttaaatagaacccactaatcaactatcaataactttatatcattacatttcaatt 52353902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 43822952 - 43822786
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||||||| ||||||||| || || | |||||| | ||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||| | || ||     
T  43822952 attttttggttcttaaatgggtcccacgcgtacacatcactcatttataattttttaatagtagtatctaataagcactcaattcctccaacccag-atc 43822854  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| ||||||||||  |   ||||||||||||||||||| ||||||||| ||||||||||||    
T  43822853 tcacacaaagttcttaaatgggacccactaatcaactatcaataactttatatcactacatttcaatt 43822786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 47364507 - 47364363
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| |||||| | ||||||||||| ||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||  |||||||| ||||||    
T  47364507 gagacatccatttttagatacttaaatgg-tctcacgtgttcacattactcatttataatttttaaatagtagtatataataaatacttaatcacttcaa 47364409  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaact 158  Q
       ||||| ||||||||||||||||||||| | | |||||||||||    
T  47364408 ctgagcatctcacacaaatttcttaaatgagacacactaatcaact 47364363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 11241435 - 11241593
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa 130  Q
    |||| |||||||||||| || |||||   |||||||||||||||||||||| ||||| ||||||| |||  ||| ||| ||||| |  ||||||||||||    
T  11241435 tactaaaatggatctcacgtatacacaccactcatttataattttttaatattagtacataataaacacccaattcctccaatccataatttcacacaaa 11241534  T
Q  131 tttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||| ||||| |  ||  ||||||||||||||||||| |||||||||||| |||||||||    
T  11241535 ttttttaaaaggtatccactaatcaactatcaataactttatatcattatatttcaatt 11241593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 44665316 - 44665430
Alignment:
Q  75 tttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatat 174  Q
    |||||||||| ||| ||||||| ||| |||| || ||||| || || ||| |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  44665316 tttaatagtaatatctaataagtactcaatcgctccaatccagtatctcatacaaatctcttaaatgaaatacactaatcaactatcaataattttatat 44665415  T
Q  175 cattacatttcaatt 189  Q
    ||||| |||||||||    
T  44665416 cattatatttcaatt 44665430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 13984223 - 13984048
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| ||||||  || ||||||||| || || |  ||||| | || |||||||||||||||||||||||||| ||||||| ||| |||| ||  ||    
T  13984223 gagacatccatttttaagttcttaaatgggtcccacgcatacacatcacacatttataattttttaatagtagtatctaataagtactcaatctctctaa 13984124  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     | || || ||||||||| ||||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||    
T  13984123 cccag-atctcacacaaaattcttaaatgagacctactaatcaactatcaataactttatatcactacatttcaatt 13984048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 27544550 - 27544462
Alignment:
Q  20 caattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatccct 108  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||| || ||||||||||| |||||||    
T  27544550 caattttttggtacttaaatgggtctcatgtgtacacatcactcatttataattttttaataatagcatctaataagcactcaatccct 27544462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 36298148 - 36297993
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataatttttt-aatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatt 132  Q
    ||||||||||||||  ||||||||| ||| |||||||||||||| |||| |||||| ||||||| ||| ||||||| ||| |||| ||  |||| || ||    
T  36298148 ttaaatggatctcacatgtacacgtcacttatttataatttttttaataatagtatttaataagaactcaatccctacaacctagtatcacacaaaagtt 36298049  T
Q  133 tcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  36298048 tcttaaatggggcc-actaatcaactatcaataattttatatcattacatttcaatt 36297993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 47783605 - 47783767
Alignment:
Q  26 tttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcac 125  Q
    |||||| ||||||||| ||||| |||||||| | | |  ||||||||||||||||| |||||| |||||| |||| |||| || ||| ||   || ||||    
T  47783605 tttggttcttaaatgggtctcacgtgtacacatcatttgtttataattttttaataatagtatttaataaacactcaatcactccaa-ctcaaatctcac 47783703  T
Q  126 acaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||| |||||||||| ||  || |||||||||||||||||||||||||||||| |||||||||    
T  47783704 acaaagttcttaaatggaacctattaatcaactatcaataattttatatcattatatttcaatt 47783767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 25813921 - 25813746
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| |||||| ||| ||||||| | || || | |||||| | ||||||||||||||||||||||| |||| |||||||| |||   ||||| |||    
T  25813921 gagacatccatttttgggttcttaaataggtcccacgcgtacacatcactcatttataattttttaatagaagtacataataagtactcggtccctccaa 25813822  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     | || || |||| |||| ||||||||||| |   ||||||||||||||||||||||||||||| ||||||| ||||    
T  25813821 cccag-atctcacgcaaagttcttaaatgagacccactaatcaactatcaataattttatatcactacatttaaatt 25813746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 43506436 - 43506268
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataatttttt-aatagtagtatataataagcacttaatcccttcaatctagcat 120  Q
    |||||||||||||||||| | |  |||||||| || | | |||||||||||||||| |||| |||||  || |||||||| ||||||| ||| | | |||    
T  43506436 attttttggtacttaaataggttacatgtgtagacatcattcatttataatttttttaatattagtacttagtaagcactcaatccctccaaccaaacat 43506337  T
Q  121 ttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||| ||||||   |   ||||||||||||||||||| ||||||| ||||||||||||||    
T  43506336 ttcacacaaatttattaaatttgactcactaatcaactatcaataactttatattattacatttcaatt 43506268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 38600947 - 38601076
Alignment:
Q  60 actcatttataat-tttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaact 158  Q
    ||||||||||||  |||||||||||| ||| ||||||| ||| ||||||||||||| ||||| |||||||||||| |||||||  |   ||||||||| |    
T  38600947 actcatttataaaatttttaatagtaatatctaataagtactcaatcccttcaatcaagcatctcacacaaattttttaaatg-gacccactaatcaatt 38601045  T
Q  159 atcaataattttatatcattacatttcaatt 189  Q
    |||||||| ||||||||||||||||| ||||    
T  38601046 atcaataactttatatcattacattttaatt 38601076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 11120736 - 11120562
Alignment:
Q  14 agacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaat 113  Q
    ||||||| |||||| |||  ||||||||||  || || ||||| | |||||||||||||| |||||||||||||| |||||| |||| |||  || |||     
T  11120736 agacatccatttttgggtttttaaatggataccacgtatacacatcactcatttataattctttaatagtagtatctaataaacactcaattactccaac 11120637  T
Q  114 ctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
      || || ||||||||| |||||||||  |||  ||||||||||||||||||| |||||||||||| |||| ||||    
T  11120636 gcag-atctcacacaaagttcttaaatacaatccactaatcaactatcaataactttatatcattatattttaatt 11120562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 11566896 - 11566990
Alignment:
Q  92 ataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttca 186  Q
    ||||||||| ||||| | ||| ||||||| |||||||||||||| |||||| |  || ||||||||||||||||| |||||||||||||||||||    
T  11566896 ataagcactcaatccttccaacctagcatatcacacaaatttctcaaatgagacttattaatcaactatcaataactttatatcattacatttca 11566990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 32851736 - 32851873
Alignment:
Q  51 gtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatact 150  Q
    |||||| | ||||||||| ||||||||||||||||||| ||||||||| | ||| ||| ||  | || || || ||| || ||||||||||  | | |||    
T  32851736 gtacacatcactcatttacaattttttaatagtagtatctaataagcaatcaattcctccatcccag-atctcccacgaagttcttaaatgggacacact 32851834  T
Q  151 aatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  32851835 aatcaactatcaataattttatatcactacatttcaatt 32851873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 51263330 - 51263200
Alignment:
Q  57 gttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaa 156  Q
    ||||||||||||||| |||| |||| |||||  |||| |||||| ||||  ||||||  ||||| |||||  |||||||||||||||| | |||||||||    
T  51263330 gttactcatttataaattttcaataatagtacctaatgagcactcaatcatttcaattcagcatctcaca--aatttcttaaatgaaacacactaatcaa 51263233  T
Q  157 ctatcaataattttatatcattacatttcaatt 189  Q
    |||||||||| ||||| |||||| |||| ||||    
T  51263232 ctatcaataactttatgtcattatattttaatt 51263200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 11569956 - 11570031
Alignment:
Q  114 ctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||| |||||||||||||| |||||| |  || ||||||||||||||||| ||||||||||||||||||||||    
T  11569956 ctagcatatcacacaaatttctcaaatgagacttattaatcaactatcaataactttatatcattacatttcaatt 11570031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 43675143 - 43675215
Alignment:
Q  23 ttttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataa 95  Q
    ||||||||||||||||| | | |||||||||||| | ||||||||||||||||||||| ||||||| ||||||    
T  43675143 ttttttggtacttaaataggtttcatgtgtacacatcactcatttataattttttaattgtagtatttaataa 43675215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 38902140 - 38902062
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcact 100  Q
    |||||| ||| ||||||||| ||||| |||||||  | ||||||||||||||||||||||||||||  |||||||||||    
T  38902140 atttttgggttcttaaatgggtctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagcact 38902062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 51504480 - 51504634
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||| ||||| ||||||||| ||||| ||||| || | ||||||||||||||||||||||||||||  || |||| ||| ||| ||| ||| | | |||     
T  51504480 atttgttggtgcttaaatgggtctcacgtgtatacatcactcatttataattttttaatagtagtacgtattaagtactcaattcctccaacccatcatc 51504579  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatca 176  Q
     ||||||| ||||||||||   |   ||| ||||||||| |||||||||||||||    
T  51504580 ccacacaagtttcttaaataggacccacttatcaactattaataattttatatca 51504634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 23333898 - 23333770
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    |||||||||||||||||||||| |||||  ||||||||||| |||| || ||| | || || ||||||| | ||||||||||| |   ||| ||||| ||    
T  23333898 actcatttataattttttaataatagtacttaataagcactcaatcactccaacccag-atctcacacacagttcttaaatgagactcactgatcaaata 23333800  T
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    ||||||| ||||||| |||| |||||||||    
T  23333799 tcaataactttatattattatatttcaatt 23333770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 51061618 - 51061735
Alignment:
Q  72 ttttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataatttta 171  Q
    ||||||||||||||||  ||||||  ||| |||| || ||| |||| |||| ||||||||||||||||||  |    |||||| ||||||||||| |||     
T  51061618 ttttttaatagtagtacttaataaatactcaatctctccaacctagtattttacacaaatttcttaaatgggacccgctaatctactatcaataactttc 51061717  T
Q  172 tatcattacatttcaatt 189  Q
    ||||||||||||||||||    
T  51061718 tatcattacatttcaatt 51061735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 9505500 - 9505590
Alignment:
Q  92 ataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacat 182  Q
    ||||| ||| ||||||||||| ||| ||| || || |||||||||||| || |  |||||||||||||||||||| ||||||| |||||||    
T  9505500 ataagaactcaatcccttcaacctaacatctcgcataaatttcttaaacgagacctactaatcaactatcaataactttatattattacat 9505590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 27110858 - 27110698
Alignment:
Q  16 acatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatct 115  Q
    ||||| ||||||| ||| |||||| ||||| | |||||||| | | | ||| |||||||||||||| |  ||| ||||||||| | |||||| |||||||    
T  27110858 acatctattttttagtatttaaattgatcttacgtgtacacatcatttatt-ataattttttaatactgatatttaataagcattcaatcccatcaatct 27110760  T
Q  116 agcatttcacacaaatttcttaaatgaaatat-actaatcaactatcaataattttatatcat 177  Q
    | ||  || |||||||||||||||  |||||| | |||||| |||||||||||| ||||||||    
T  27110759 atcacctctcacaaatttcttaaa-caaatatcagtaatcatctatcaataattatatatcat 27110698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 14775125 - 14775277
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaattt 133  Q
    ||||||||||||||| ||||||  | ||| |||||||||||| |||||||||||  ||||||  ||| |||||||  |||  |  || | |||||||| |    
T  14775125 ttaaatggatctcatatgtacatataacttatttataattttctaatagtagtaactaataaatactcaatccctcaaattcaatatcttacacaaatct 14775224  T
Q  134 cttaaatgaaatatactaatcaactatcaataattttatatcattacatttca 186  Q
    |||||| ||||| ||  | ||| |||||||||| | | |||||||||||||||    
T  14775225 cttaaacgaaatctatcactcatctatcaataactctgtatcattacatttca 14775277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 38118910 - 38118978
Alignment:
Q  118 catttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttca 186  Q
    |||||||| ||||||| |||||||| |   | ||||||||||||||||||||||||| |||||||||||    
T  38118910 catttcactcaaattttttaaatgagactcattaatcaactatcaataattttatattattacatttca 38118978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 49003340 - 49003471
Alignment:
Q  50 tgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatac 149  Q
    ||||||| |||||| |||||||||||||||||||| ||  ||||||| | | |||| || ||| | ||||| ||||||||| ||||||||| | |   ||    
T  49003340 tgtacacattactc-tttataattttttaatagtaatacctaataagtattcaatctctccaaccgagcatctcacacaaaattcttaaattagacccac 49003438  T
Q  150 taatcaactatcaataattttatatcattacat 182  Q
     |||||||||||||||| ||||||  |||||||    
T  49003439 aaatcaactatcaataactttatacaattacat 49003471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 33780511 - 33780582
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatc 105  Q
    ||||| |||||||| |||||||| | || | |||||||||||||||||  ||||||||||||||||| ||||    
T  33780511 ttaaacggatctcacgtgtacacatcacacttttataattttttaataacagtatataataagcactcaatc 33780582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 26701433 - 26701482
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataa 71  Q
    |||||||||||||||||||||||||||||||| |  | ||||||||||||    
T  26701433 attttttggtacttaaatggatctcatgtgtagatatcactcatttataa 26701482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 31133165 - 31133206
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  31133165 actaatcaactatcaataatttcatatcattacatttaaatt 31133206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 24555820 - 24555856
Alignment:
Q  62 tcatttataattttttaatagtagtatataataagca 98  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24555820 tcatttataattttttaatagtagtatctaataagca 24555856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 33041495 - 33041455
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaat 188  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  33041495 actaattaactatcaataattttatatcattacatatcaat 33041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 641831 - 641870
Alignment:
Q  150 taatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  641831 taatcaactatcaataactttatatcattacatatcaatt 641870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 35839185 - 35839063
Alignment:
Q  52 tacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagc-atttcacacaaatttcttaaatgaaatatact 150  Q
    ||||||||||| ||||||||| |||||||| ||||||  ||||| || |||||  ||| || || |  || | ||||||||||||||||| |||| || |    
T  35839185 tacacgttacttatttataatattttaataatagtattaaataaacatttaatttcttaaa-ctcgatatcttacacaaatttcttaaataaaatttatt 35839087  T
Q  151 aatcaactatcaataattttatat 174  Q
    ||| |||||||||||| |||||||    
T  35839086 aattaactatcaataactttatat 35839063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 42401165 - 42401098
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcact 100  Q
    |||||| ||||| ||||||||||| | |||| |||||||||||||||||  ||||  |||||||||||    
T  42401165 cttaaacggatcccatgtgtacacatcactcttttataattttttaataacagtacctaataagcact 42401098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 19415424 - 19415390
Alignment:
Q  64 atttataattttttaatagtagtatataataagca 98  Q
    ||||||||||||||||||||||||| |||||||||    
T  19415424 atttataattttttaatagtagtatttaataagca 19415390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 3623108 - 3623157
Alignment:
Q  135 ttaaatgaaatatactaatcaactatcaataattttatatcattacattt 184  Q
    |||||||| || |||||||||||||||||||| |||| ||||||| ||||    
T  3623108 ttaaatgagatttactaatcaactatcaataactttagatcattatattt 3623157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 11449360 - 11449232
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    |||||||||||||||||||| | |||||  |||||| || | |||| ||  || || ||||  |||| |||||||||||||  ||   | ||||||||||    
T  11449360 actcatttataattttttaacaatagtacctaataatcattcaatctctcaaacctggcatcacacataaatttcttaaatataactcattaatcaacta 11449261  T
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    | || || ||||||||||||||||||||||    
T  11449260 taaa-aactttatatcattacatttcaatt 11449232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 24555864 - 24555897
Alignment:
Q  156 actatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||||||| |||||||||    
T  24555864 actatcaataattttatatcattatatttcaatt 24555897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 32451717 - 32451782
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagca 98  Q
    ||||||||| ||||| || ||||| | ||| ||||||||||||||||||||| ||  |||||||||    
T  32451717 cttaaatgggtctcacgtttacacatcactaatttataattttttaatagtaatacctaataagca 32451782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 37586435 - 37586483
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaata 81  Q
    ||||| ||||||||||||||| |||| | | ||||||||||||||||||    
T  37586435 cttaagtggatctcatgtgtaaacgtcatttatttataattttttaata 37586483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 29558512 - 29558347
Alignment:
Q  23 ttttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcattt 122  Q
    |||||| ||||||||||| ||| ||||||||||| | ||||||||| |||||||||||| |||||  |||||||||||||||| ||||||   ||||| |    
T  29558512 ttttttagtacttaaatgaatcacatgtgtacacatcactcatttacaattttttaataatagtac-taataagcacttaatctcttcaactcagcatct 29558414  T
Q  123 cacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| ||||    
T  29558413 cacacaaatttcttaaataagatctaataatcaactatcaataattttatatcattacattttaatt 29558347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 26675427 - 26675593
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||| ||||| ||||||| |||||| ||||||| | ||||||||||||||||||||||||||||| | ||||||||||||| ||||| | ||   ||     
T  26675427 atttttgggtacctaaatgggtctcatatgtacacatcactcatttataattttttaatagtagtatcttataagcacttaat-ccttccaactcagatc 26675525  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||| ||||||||||||| | |   ||||||||| ||||||||| |||||||||| ||| |||||||    
T  26675526 tcacataaatttcttaaattagacccactaatcaaatatcaataactttatatcatcacacttcaatt 26675593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 26947035 - 26947201
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||| ||||| ||||||| |||||| ||||||| | ||||||||||||||||||||||||||||| | ||||||||||||| ||||| | ||   ||     
T  26947035 atttttgggtacctaaatgggtctcatatgtacacatcactcatttataattttttaatagtagtatcttataagcacttaat-ccttccaactcagatc 26947133  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||| ||||||||||||| | |   ||||||||| ||||||||| |||||||||| ||| |||||||    
T  26947134 tcacataaatttcttaaattagacccactaatcaaatatcaataactttatatcatcacacttcaatt 26947201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 35463177 - 35463342
Alignment:
Q  25 ttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatct-agcatttc 123  Q
    |||||||||||||||||||   |  |||| || | |||| |||||||||||||||||||||||  ||||||| ||| ||||| ||||| |  | ||| ||    
T  35463177 ttttggtacttaaatggattctacatgtatacatgactcgtttataattttttaatagtagtacctaataagtactcaatcctttcaaacccaacatctc 35463276  T
Q  124 acacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||||||  |  |||||||||||||||||||||||||||||  ||||||||    
T  35463277 acacaaatttcttaaatgaaattcataaatcaactatcaataattttatatcattatgtttcaatt 35463342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 42551054 - 42551195
Alignment:
Q  49 gtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaa-tgaaatat 147  Q
    |||||||| | | |||||||||||||||||||| ||||| |||||||||| | |||||||  || ||||||| |||||||||||||||||| | |||  |    
T  42551054 gtgtacacatcattcatttataattttttaataatagtacataataagcaatcaatccctcaaacctagcatctcacacaaatttcttaaatttaaactt 42551153  T
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    | |||||||| |||||||||||||||| ||||||||| ||||    
T  42551154 agtaatcaaccatcaataattttatatgattacattttaatt 42551195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 41520800 - 41520976
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| |||||||||| ||||||||| | ||| |||||||| | ||| |||||||||||||||||||| |||  ||||||| ||| ||||||| |||    
T  41520800 gagacatccattttttggttcttaaatgggtttcacgtgtacacatcacttatttataattttttaatagtggtacctaataagaactcaatccctccaa 41520899  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     | ||||| ||||||||| ||| ||||||  |   || ||| |||||||||||| |||||| |||||||| ||||||    
T  41520900 cccagcatctcacacaaagttcctaaatgggacccacaaattaactatcaataactttataccattacatatcaatt 41520976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 837732 - 837858
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    |||||||||||| ||||||| || | ||| ||||||||||| |||| |||||| | || || ||||| ||||||||||||||||| | |||||  |||||    
T  837732 actcatttataaatttttaacagcaatatctaataagcactcaatctcttcaacccagtatctcacataaatttcttaaatgaaacaaactaa--aacta 837829  T
Q  160 tcaataattttatatcattacatttcaat 188  Q
    || ||||||||||||||||||||||||||    
T  837830 tctataattttatatcattacatttcaat 837858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 1309752 - 1309876
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    |||||||||||||||||| |||||| ||||||||||| |||| || ||||| |  || ||||||||| |||||||||   ||| ||||||||| ||||||    
T  1309752 atttataattttttaataatagtatctaataagcactcaatcactccaatccaa-atctcacacaaagttcttaaattggatacactaatcaattatcaa 1309850  T
Q  164 taattttatatcattacatttcaatt 189  Q
    |||||||||||||||| |||| ||||    
T  1309851 taattttatatcattatattttaatt 1309876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 1666714 - 1666886
Alignment:
Q  16 acatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatct 115  Q
    ||||| |||||||| ||||||||||||| ||| |||||||| | | | | ||||||||||| | |  |||||  | ||||||||| |||| || ||| |     
T  1666714 acatctattttttgatacttaaatggatttcacgtgtacacatcatttacttataatttttaactc-tagtactttataagcactcaatctctccaaccc 1666812  T
Q  116 agcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||| |||| ||||||||||||| ||| || ||||||||||||||||| |||||||| ||| || ||||||    
T  1666813 agcattttacacgaatttcttaaatggaatctaataatcaactatcaataactttatatcgttatatctcaatt 1666886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 8228952 - 8228779
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| ||||||||||||||||| | ||||||  ||||||    | |||||||||||||||||| | |||||| ||||||  ||| ||||||| |||    
T  8228952 gagacatctattttttggtacttaaacgaatctcacatgtacaaaccaatcatttataattttttaacaatagtatctaataaatactcaatccctccaa 8228853  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttca 186  Q
       | ||| ||| ||| |||| | |||| | ||  || |||||||||||||||||| |||||||||||||||||    
T  8228852 cacatcatctcatacagatttttaaaataagatccacgaatcaactatcaataattgtatatcattacatttca 8228779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 12593308 - 12593141
Alignment:
Q  16 acatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatct 115  Q
    |||| ||||||| | ||||||||| | || || |||||||| | |||||||||||| |||||||||||||||| ||||||| ||| | ||||  ||  |     
T  12593308 acattaatttttggatacttaaattggtcacacgtgtacacatcactcatttataactttttaatagtagtatctaataagtactcattccc-ccatccc 12593210  T
Q  116 agcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacattt 184  Q
      | | ||| ||||||||||||||||| |   ||||||||| ||||||||| |||||||||||||||||    
T  12593209 cacgtctcaaacaaatttcttaaatgagaccaactaatcaattatcaataactttatatcattacattt 12593141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 15468163 - 15468236
Alignment:
Q  116 agcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||| ||||||||||||||||||||  ||  ||||||||  |||||||||||||||||||||| |||||||||    
T  15468163 agcatctcacacaaatttcttaaatgggatccactaatcatttatcaataattttatatcattaaatttcaatt 15468236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 42951779 - 42951846
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| ||||||||||| |   ||||||||| ||||||||||||||||||| ||||||||||||    
T  42951779 tcacacaaagttcttaaatgagacccactaatcaattatcaataattttatatcactacatttcaatt 42951846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 4432465 - 4432340
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||| ||||||||||| ||  ||| ||| | | |||||||| ||   ||||| ||||| ||||||||||||||| ||  | | |||| |||||||    
T  4432465 atttataatattttaatagtaatacttaaaaagaattcaatcccttaaacgcagcatctcacaaaaatttcttaaatgagattcattgatcagctatcaa 4432366  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||| ||||||| ||||||||||||||    
T  4432365 taactttatataattacatttcaatt 4432340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 2970322 - 2970438
Alignment:
Q  23 ttttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcattt 122  Q
    ||||||||| ||| |||| ||||||  | ||||| | |||||||||||||||||||||||||||| |||||| ||| | |||| || ||| |||  || |    
T  2970322 ttttttggtgcttcaatgaatctcacatatacacatcactcatttataattttttaatagtagtacataatatgcattcaatctctgcaacctaaaatct 2970421  T
Q  123 cacacaaatttcttaaa 139  Q
    | ||||||||| |||||    
T  2970422 ctcacaaattttttaaa 2970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 33133236 - 33133346
Alignment:
Q  63 catttataattttttaatagtagtatataataagcacttaatcccttcaatct-agcatttcacacaaatttcttaaatgaaatatactaatcaactatc 161  Q
    ||||||||| |||||||||||| ||| || |||||||| |||| || ||| || ||||| ||||||||||||||||||| | |   ||||||||||||||    
T  33133236 catttataaatttttaatagtaatattta-taagcactcaatctct-caaactcagcatctcacacaaatttcttaaataagactcactaatcaactatc 33133333  T
Q  162 aataattttatat 174  Q
    ||||| |||||||    
T  33133334 aataactttatat 33133346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 34382465 - 34382581
Alignment:
Q  68 ataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataat 167  Q
    |||||||||||| ||| ||| |||||||  |||||||| || ||| | ||||  ||||||| || |||||||  |  | || |||||| |||||||||||    
T  34382465 ataattttttaaaagtggtacataataaaaacttaatctctccaacccagcaactcacacagatatcttaaacaaggtctattaatcatctatcaataat 34382564  T
Q  168 tttatatcattacattt 184  Q
    |||||||||||||||||    
T  34382565 tttatatcattacattt 34382581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 3558887 - 3558782
Alignment:
Q  84 agtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatt 183  Q
    ||||| ||||||| ||| ||||||| ||||| ||||| ||||||||||||| ||||||  |   | ||||||||||||||||| |||| || |||| ||     
T  3558887 agtatctaataagaactcaatccctccaatccagcatgtcacacaaatttcataaatgggacccattaatcaactatcaataactttaaattattagata 3558788  T
Q  184 tcaatt 189  Q
    ||||||    
T  3558787 tcaatt 3558782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 11200542 - 11200453
Alignment:
Q  51 gtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaat 140  Q
    |||||| | |||||||||||||||||||||| || ||  ||||||| | | |||  || ||| | |||||||||||||||||||||||||    
T  11200542 gtacacatcactcatttataattttttaataataatacctaataagtattaaatttctccaacccagcatttcacacaaatttcttaaat 11200453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 13486692 - 13486594
Alignment:
Q  90 taataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||| |||| || ||| |||| || || |||||| || ||||||| ||   |||||||| |||||||||| |||||||||||| |||||||||    
T  13486692 taataagcactcaatcactccaacctag-atctctcacaaagtttttaaatggaacccactaatcagctatcaataactttatatcattatatttcaatt 13486594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 14642263 - 14642330
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||| ||||||||||| ||   ||||| ||||||||||||||||| |||||||||||| |||| ||||    
T  14642263 tcactcaaatttcttatatatgatatattaatcaactatcaataactttatatcattatattttaatt 14642330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 20420226 - 20420179
Alignment:
Q  142 aaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||| |||||||||||||||||||| |||||||||||| || ||||||    
T  20420226 aaatttactaatcaactatcaataactttatatcattatatatcaatt 20420179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 22579842 - 22579683
Alignment:
Q  30 gtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaa 129  Q
    ||||||||||| |||||| ||  |||  | ||||||||||||||||||||||||| | |  ||||| |||| ||||||  ||||| | || |||| ||||    
T  22579842 gtacttaaatgaatctcacgtacacatatcactcatttataattttttaatagtaatgtgaaataaacactcaatccccacaatccatcaattcatacaa 22579743  T
Q  130 atttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||| |||||  | |   | |||| | |||||||||| ||||||| ||||||||| ||||    
T  22579742 attttttaaacaagactcattaattatctatcaataactttatataattacattttaatt 22579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 11200906 - 11200753
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtata--taataagcacttaatcccttcaatctagcatttcacaca 128  Q
    ||||||||||| |  || |||||||| | || | |||||||||||||||| |||| |    |||||| |||| ||| |||  |||||| ||| |||||||    
T  11200906 tacttaaatgggttacacgtgtacacatcacacgtttataattttttaattgtagcactcctaataaacactcaattcctctaatctaacatctcacaca 11200807  T
Q  129 aatttcttaaatgaaatatactaatcaactatcaataattttatatcattacat 182  Q
    || ||||| ||| | |  || | ||||||||||||||||||||||| |||||||    
T  11200806 aaattcttgaataagacctattgatcaactatcaataattttatattattacat 11200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 6761417 - 6761482
Alignment:
Q  124 acacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||| || ||| ||||  ||||||||||| |||| || ||||||||||||||||| ||||    
T  6761417 acacaaattttttcaataaaattcactaatcaactgtcaacaactttatatcattacattttaatt 6761482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 6818748 - 6818825
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatg 141  Q
    ||||||||| ||||||||| | |||    ||| |||||||||||||||| ||| || |||| ||||||||||||||||    
T  6818748 atttataatcttttaatagaaatatcctgtaaacacttaatcccttcaacctaacaattcatacaaatttcttaaatg 6818825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 7293097 - 7293056
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||| ||||||||||||  |||||||||||||||||||||    
T  7293097 actaattaactatcaataacattatatcattacatttcaatt 7293056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 13420781 - 13420822
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||| ||||||| |||| |||||||||    
T  13420781 actaatcaactatcaataactttatataattatatttcaatt 13420822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 4740371 - 4740415
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataatttttta 78  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||||    
T  4740371 ttaaatggacctcatgtgtacacatcacttatttataatttttta 4740415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 42951704 - 42951752
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatccct 108  Q
    |||||||||||||||| ||||| ||||| |||||||| ||| |||||||    
T  42951704 actcatttataattttgtaataatagtacataataagtactcaatccct 42951752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 23036959 - 23036804
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaattt 133  Q
    ||||||||||||||| ||||||| | ||||| ||||||||||| ||||||||||| ||||||| ||| |||| |||||| | ||||| ||||||||||||    
T  23036959 ttaaatggatctcatttgtacacatcactcaattataatttttcaatagtagtatctaataagaactcaatctcttcaacccagcatctcacacaaattt 23036860  T
Q  134 cttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||  |||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  23036859 cttaatagaaatccactgatcaactatcaataattttatatcattacatatcaatt 23036804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 1155075 - 1155240
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||| |||||||||||| |||||||||||| |  |||||||| | ||||||||||||||||||||||||||||| ||||||||| | ||||||| |||    
T  1155075 gagacaacaattttttggttcttaaatggatcccgcgtgtacacatcactcatttataattttttaatagtagtatctaataagcattcaatccctccaa 1155174  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcatta 179  Q
     | || || ||||||||||||||||||||| | ||| |||||||||| |||||| ||||||||||||    
T  1155175 cccag-atctcacacaaatttcttaaatgagacatattaatcaactaccaataactttatatcatta 1155240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 2603062 - 2603186
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||| ||||| || || ||||||||| ||||||||||| ||  ||||||||||||||||    
T  2603062 atttataattttttaatagtagtatctaataagtactcaatccctccaatccag-atctcacacaaagttcttaaatgagatccactaatcaactatcaa 2603160  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||| ||||||||| ||||||||||||    
T  2603161 taactttatatcactacatttcaatt 2603186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 11777655 - 11777779
Alignment:
Q  62 tcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatc 161  Q
    ||||||||||||| ||||||||||||  ||| ||||| | ||||||| ||||| |  || ||||||||||||||||||||| |  |||||||||||||||    
T  11777655 tcatttataatttcttaatagtagtacctaacaagcattcaatccctgcaatccat-atatcacacaaatttcttaaatgagacctactaatcaactatc 11777753  T
Q  162 aataattttatatcattacatttcaa 187  Q
    ||||| ||||||||||||||||||||    
T  11777754 aataactttatatcattacatttcaa 11777779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 7288409 - 7288242
Alignment:
Q  12 agagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttca 111  Q
    |||||||||  ||||||  ||||||||||  |||||||| || |  | ||| |||||||||| ||| |||||||||| ||||||| ||||||||||| ||    
T  7288409 agagacatccgtttttttatacttaaatgagtctcatgtatagatatcacttatttataattgtttcatagtagtatctaataagaacttaatccctcca 7288310  T
Q  112 atctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcatta 179  Q
    | | ||||| ||| | ||||||||||||||| |  ||||||||||||||| |||| ||||||||||||    
T  7288309 acccagcatctcatagaaatttcttaaatgagacttactaatcaactatcgataactttatatcatta 7288242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 23812559 - 23812710
Alignment:
Q  63 catttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa-tttcttaaatgaaatatactaatcaactatc 161  Q
    ||||| ||| ||||||||  |||||  ||||||||||| |||| || ||||||||||| ||||||||| ||| |||||||  ||  ||||||||||||||    
T  23812559 catttttaagtttttaattatagtacctaataagcactcaatctctccaatctagcatctcacacaaaattttttaaatggtattcactaatcaactatc 23812658  T
Q  162 aataattttatatcattacatttcaattgaaaatatcgaatcttcaaagttt 213  Q
    ||||| ||||||| |||| ||||||||||||||  |||| ||||||||||||    
T  23812659 aataactttatataattatatttcaattgaaaaagtcgagtcttcaaagttt 23812710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 9604491 - 9604616
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    |||||||||||||||||| |||||| ||||||| ||| ||||| | ||| | ||||| ||| | |||||||||||||| ||   ||||||||||||||||    
T  9604491 atttataattttttaataatagtatctaataagaactcaatccatccaacccagcatctcataaaaatttcttaaatggaacccactaatcaactatcaa 9604590  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||| |||||||||||| |||||||||    
T  9604591 taactttatatcattagatttcaatt 9604616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 28540806 - 28540681
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||||||||||||||  ||||||| | | |||  || ||| | ||||| |||||||||||||||||| || |   ||||||||||||||||    
T  28540806 atttataattttttaatagtagtacttaataagtattcaattactccaacccagcatctcacacaaatttcttaaaagagactcactaatcaactatcaa 28540707  T
Q  164 taattttatatcattacatttcaatt 189  Q
    || |||||||||||||||||||||||    
T  28540706 tagttttatatcattacatttcaatt 28540681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 18806528 - 18806682
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaattt 133  Q
    |||||||| | ||| |||||||| | ||| ||||||||||||||||||||||||| |||||| || |  ||| ||  || |||| || ||||||||||||    
T  18806528 ttaaatgggtttcacgtgtacacatcacttatttataattttttaatagtagtatctaataaacattcgatcactcaaacctag-atctcacacaaattt 18806626  T
Q  134 cttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     |||||||  ||  ||||||||||||||||||| |||||||||||| |||||||||    
T  18806627 tttaaatgggatccactaatcaactatcaataactttatatcattatatttcaatt 18806682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 31226417 - 31226583
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||| ||| ||||||||| | |||  ||||||| | ||||||||||||||||||||||||||||  ||||||  ||| || | || ||| |||| ||     
T  31226417 atttttgggttcttaaatgggtgtcacatgtacacatcactcatttataattttttaatagtagtacctaataaatactcaaacactccaacctag-atc 31226515  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| ||||||||||  |   |||| ||||||||||||||||||||||||||| |||||||||    
T  31226516 tcacacaaagttcttaaatgggacccactactcaactatcaataattttatatcattatatttcaatt 31226583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 6519033 - 6519156
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||||||||||||||  ||||||| | | |||| || ||| | ||||| |||||  |||||||||||||| |   ||||||||||||||||    
T  6519033 atttataattttttaatagtagtacctaataagaattcaatctctccaacccagcatctcaca--aatttcttaaatgagactcactaatcaactatcaa 6519130  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||| ||||||||||||||||||||||    
T  6519131 taactttatatcattacatttcaatt 6519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 30714033 - 30714158
Alignment:
Q  59 tactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaact 158  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||   | ||||| | ||| ||||||||||||  ||||||  |   |||||||||||    
T  30714033 tacttatttataatattttaatagtagtacataataagcacttaatatttccaatccaacatctcacacaaattttgtaaatgggactcactaatcaact 30714132  T
Q  159 atcaataattttatatcattacattt 184  Q
    |||||||| |||||||||||||||||    
T  30714133 atcaataactttatatcattacattt 30714158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 30721810 - 30721935
Alignment:
Q  59 tactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaact 158  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||   | ||||| | ||| ||||||||||||  ||||||  |   |||||||||||    
T  30721810 tacttatttataatattttaatagtagtacataataagcacttaatatttccaatccaacatctcacacaaattttgtaaatgggactcactaatcaact 30721909  T
Q  159 atcaataattttatatcattacattt 184  Q
    |||||||| |||||||||||||||||    
T  30721910 atcaataactttatatcattacattt 30721935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 35973356 - 35973500
Alignment:
Q  45 tcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaa 144  Q
    |||||||||||  ||||| |||||||||||||||||||| |||  |||||| |||||||||| | |||   |  || ||||||| ||||||||||||| |    
T  35973356 tcatgtgtacagattacttatttataattttttaatagttgtacctaataaacacttaatccatccaactcaatatctcacacacatttcttaaatgaga 35973455  T
Q  145 tatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    | |||||||||| |||||||||  ||||||||||| || ||||||    
T  35973456 tctactaatcaattatcaataacattatatcattatatatcaatt 35973500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 31128542 - 31128670
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    ||||||||||||||||||||||||||||  ||||||||| | |||| ||  || |||  || || |||||| ||||||||||| |  ||||||| |||||    
T  31128542 actcatttataattttttaatagtagtacctaataagcattcaatcactctaacctaa-atctctcacaaagttcttaaatgagacctactaataaacta 31128640  T
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    ||||||| |||||||||||| |||||||||    
T  31128641 tcaataactttatatcattatatttcaatt 31128670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 4797180 - 4797348
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||| | ||||||||||||||||| ||||||   | ||| |||||||||||||||||||||| || ||||||  |  |||||||| |||   |||||     
T  4797180 atttttggatacttaaatggatctcacgtgtacgtatcactaatttataattttttaatagtagcatttaataaatatctaatccctccaactcagcatc 4797279  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataa-ttttatatcattacatttcaatt 189  Q
    ||||||||||||||||||||  |   | ||||||||||||||||| ||| ||||||| |||||| ||||    
T  4797280 tcacacaaatttcttaaatgtgactcattaatcaactatcaataactttaatatcatcacattttaatt 4797348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 5535768 - 5535907
Alignment:
Q  49 gtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatata 148  Q
    |||||||| | |||||||||||||||||||||| |||||  | ||||||||| |||| || ||| |||| || ||||||||| |||||||| | ||   |    
T  5535768 gtgtacacatcactcatttataattttttaatattagtaccttataagcactcaatcactccaacctag-atctcacacaaagttcttaaacggaaccca 5535866  T
Q  149 ctaatcaactatcaataattttatatcattacatttcaatt 189  Q
    | |||||||| ||||||| |||||||||||| |||||||||    
T  5535867 caaatcaactttcaataactttatatcattatatttcaatt 5535907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 13628995 - 13629151
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatt 132  Q
    ||||||||| |||||  ||||||| | | ||||||||||||||||||||||||||| ||||||| | | ||||||| ||| | | ||| ||| ||||| |    
T  13628995 cttaaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcatacaaaat 13629094  T
Q  133 tcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||   ||  |  |||||||||||||||| |||||| |||||||| ||||||    
T  13629095 tcttaaataggatccagaaatcaactatcaataactttataccattacatatcaatt 13629151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 13729407 - 13729563
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatt 132  Q
    ||||||||| |||||  ||||||| | | ||||||||||||||||||||||||||| ||||||| | | ||||||| ||| | | ||| ||| ||||| |    
T  13729407 cttaaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcatacaaaat 13729506  T
Q  133 tcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||   ||  |  |||||||||||||||| |||||| |||||||| ||||||    
T  13729507 tcttaaataggatccagaaatcaactatcaataactttataccattacatatcaatt 13729563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 28538237 - 28538071
Alignment:
Q  23 ttttttggtacttaaatggatctcatgtgtacacgttactcatttataatt--ttttaatagtagtatataataagcacttaatcccttcaatctagcat 120  Q
    ||||| |||||||||||| ||||||  ||||||| | ||||||||||||||  |||||||| |||||  |||||| |||||||||| | |||  || |||    
T  28538237 tttttcggtacttaaatg-atctcaaatgtacacatcactcatttataattttttttaataatagtacttaataaacacttaatccttacaacataacat 28538139  T
Q  121 ttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaat 188  Q
     |||||||||| ||||||| || |     |||||| ||||||||||||||||||||||| ||||||||    
T  28538138 ctcacacaaatgtcttaaacgagactcgttaatcatctatcaataattttatatcattaaatttcaat 28538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 35893547 - 35893392
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa 130  Q
    |||||||||| ||| ||||||||||| ||| |  |||||||||||||||||||||||| ||||||||| | |||  |||||| | | |  |||| |||||    
T  35893547 tacttaaatg-atcacatgtgtacacattatttctttataattttttaatagtagtatttaataagcagtcaatttcttcaacccaccgcttcagacaaa 35893449  T
Q  131 tttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaa 187  Q
    ||| |||||  ||| | | || ||| ||||||||||||||||||||||| |||||||    
T  35893448 ttttttaaacaaaacacattagtcatctatcaataattttatatcattatatttcaa 35893392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 37673695 - 37673869
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataag-----cacttaatccc 107  Q
    |||||||| |||||| ||| |||||||   | ||| | |||||| | ||||||||||||||||||||||||||||  |||||||      ||||||||||    
T  37673695 gagacatccatttttgggttcttaaatatgtgtcacgcgtacacatcactcatttataattttttaatagtagtacctaataagtacttaacttaatccc 37673794  T
Q  108 ttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatt 183  Q
    | ||||| || || ||||||||| |||||||||   |   ||||||||||||||||||||||||||||| ||||||    
T  37673795 tccaatccag-atctcacacaaagttcttaaattggacccactaatcaactatcaataattttatatcactacatt 37673869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 3628362 - 3628239
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    |||||||||||||||||||||||   ||||||||||| ||| ||| |||   ||  | || |||||||||||||||||||||  | |||||||||| |||    
T  3628362 atttataattttttaatagtagtgcttaataagcactaaattcctccaactcag--tatctcacaaatttcttaaatgaaattcattaatcaactagcaa 3628265  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||| ||||||||||||||| ||||||    
T  3628264 taactttatatcattacatctcaatt 3628239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 426
Target Start/End: Original strand, 23812812 - 23812930
Alignment:
Q  309 gaagttatcaatattataaaatgcattgttttattaaaagataaaggaa-aaatcgaaatgtcatgggtatattgaaatcaatagaacaaatttgaatag 407  Q
    |||| ||||| ||||| ||||||||||| |||||||||||| || || | ||||| || ||  | | ||||||||||||||||||| |||||||||  ||    
T  23812812 gaagctatcagtattaaaaaatgcattgctttattaaaagaaaatgggagaaatccaagtgctaggagtatattgaaatcaatagaccaaatttgagcag 23812911  T
Q  408 accctccaatggttggaga 426  Q
    || ||||||||||||||||    
T  23812912 actctccaatggttggaga 23812930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 16531567 - 16531683
Alignment:
Q  72 ttttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataatttta 171  Q
    ||||||||||||| ||| ||||||||||| ||||  | ||| |||| || ||| ||||| |||||||| || || ||||||||||||||  |||| ||||    
T  16531567 ttttttaatagtaatatttaataagcactcaatcattccaacctag-atctcatacaaaattcttaaaagagatctactaatcaactattcataacttta 16531665  T
Q  172 tatcattacatttcaatt 189  Q
    |||||||| |||||||||    
T  16531666 tatcattatatttcaatt 16531683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 28557381 - 28557256
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||||||||||||||  ||||||  ||| ||| ||| ||| |||| || ||||| || ||| ||||| || |   ||||||||||||||||    
T  28557381 atttataattttttaatagtagtacctaataactactcaattcctccaacctaggatctcacataatttttttaaaagagactcactaatcaactatcaa 28557282  T
Q  164 taattttatatcattacatttcaatt 189  Q
     | |||||||| ||||||||||||||    
T  28557281 cacttttatattattacatttcaatt 28557256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 12734168 - 12734053
Alignment:
Q  73 tttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttat 172  Q
    |||||||||||||| |   |||| ||||||||||||||||   ||||| ||||||||||||||||||||| |   ||||||||||||||   || |||||    
T  12734168 tttttaatagtagttttctataaacacttaatcccttcaactgagcatctcacacaaatttcttaaatgaga-ccactaatcaactatcctcaactttat 12734070  T
Q  173 atcattacatttcaatt 189  Q
    |||||||||||| ||||    
T  12734069 atcattacattttaatt 12734053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 6427141 - 6427216
Alignment:
Q  114 ctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||| |||||||||||| ||||||   |  ||||||||||||||||||||||||||||||||| |||| ||||    
T  6427141 ctagcatctcacacaaattttttaaataggacctactaatcaactatcaataattttatatcattatattttaatt 6427216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 9134228 - 9134161
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| ||||||||||| |   ||||||||||||||||||| |||||||||||| |||||||||    
T  9134228 tcacacaaagttcttaaatgagactcactaatcaactatcaataactttatatcattatatttcaatt 9134161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 36316838 - 36316771
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||| ||||||||||| || ||| |  | ||||||||||||||||||||||||||||||||||||||    
T  36316838 tcacagaaatttcttaagtggaatttcatgatcaactatcaataattttatatcattacatttcaatt 36316771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 5139722 - 5139784
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacattt 184  Q
    |||||||||  ||||||||||||   |||||||||||||||||||||||||||||||| ||||    
T  5139722 tcacacaaagctcttaaatgaaactcactaatcaactatcaataattttatatcattatattt 5139784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 10954145 - 10954186
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10954145 actaatcaactatcaattattttatatcattacatttcaatt 10954186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 10962150 - 10962191
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10962150 actaatcaactatcaattattttatatcattacatttcaatt 10962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 4326098 - 4326033
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataatttttta 78  Q
    |||||| | |||||| | ||||||||||| ||||| |||||||| | |||||||||||||||||||    
T  4326098 gagacacctatttttggatacttaaatgggtctcaagtgtacacatcactcatttataatttttta 4326033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 5978589 - 5978630
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  5978589 actaatcaactatcaataactttatatcattatatttcaatt 5978630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 23812728 - 23812776
Alignment:
Q  202 tcttcaaagtttgagacatc-ccattggagattgtctaataactttaag 249  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  23812728 tcttcaaagtttgagacacctccattggagatggtctaataactttaag 23812776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 23982434 - 23982366
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaata 81  Q
    |||||| | |||||| ||| ||||||||| | ||| |||||||| | ||||||||||||||||||||||    
T  23982434 gagacacctatttttgggttcttaaatggttttcacgtgtacacatcactcatttataattttttaata 23982366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 38937957 - 38937809
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaattt 133  Q
    |||||||||||| |||||||||  | ||| ||||||||||||||||||||   |  ||||||| ||| ||||||| |||   | ||| ||||||||| ||    
T  38937957 ttaaatggatcttatgtgtacatatcacttatttataattttttaatagtgacacctaataagaactcaatccctccaacacaacatctcacacaaagtt 38937858  T
Q  134 cttaaatgaaatatactaatcaactatcaataattttatatcattacat 182  Q
     ||||||   ||  || ||||||||||||| || |||||||||| ||||    
T  38937857 tttaaataggatccacaaatcaactatcaacaactttatatcatcacat 38937809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 1737803 - 1737842
Alignment:
Q  150 taatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  1737803 taatcaactatcaataactttatattattacatttcaatt 1737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 23982296 - 23982254
Alignment:
Q  147 tactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||| ||||||||||||| |||||||||||| |||||||||    
T  23982296 tactaaccaactatcaataactttatatcattatatttcaatt 23982254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 43294745 - 43294835
Alignment:
Q  72 ttttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatca 162  Q
    ||||||||| || |||  ||||||| |||  |||| ||||||| ||||| ||| | || ||| |||||||| |||||||||||||||||||    
T  43294745 ttttttaatggttgtacttaataagtactcgatccattcaatccagcatctcatataagttttttaaatgagatatactaatcaactatca 43294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 13079959 - 13079894
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagta 87  Q
    |||||||| |||||||||   ||||| |||||||  | ||||||||||||||||| ||||||||||    
T  13079959 attttttgatacttaaataagtctcacgtgtacatttcactcatttataatttttgaatagtagta 13079894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 5569278 - 5569238
Alignment:
Q  149 ctaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||  |||||||||||||||| ||||    
T  5569278 ctaatcaactatcaataacattatatcattacatttgaatt 5569238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 9135166 - 9135095
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatc 105  Q
    ||||||||| ||||| |||||||  | ||||||||| ||||||| ||||||||||  ||||||||||| ||||    
T  9135166 cttaaatgggtctcacgtgtacatatcactcatttacaattttt-aatagtagtacctaataagcactcaatc 9135095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 9790083 - 9790143
Alignment:
Q  115 tagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatc 175  Q
    |||||| ||||||||||||||||||||| |   | |||||||||||||| ||| |||||||    
T  9790083 tagcatctcacacaaatttcttaaatgagactcattaatcaactatcaaaaatcttatatc 9790143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 30788681 - 30788637
Alignment:
Q  62 tcatttataattttttaatagtagtatataataagcacttaatcc 106  Q
    |||||| |||||||||||||||| ||| |||||| ||||||||||    
T  30788681 tcatttgtaattttttaatagtaatatctaataaacacttaatcc 30788637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 31330562 - 31330404
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa 130  Q
    ||||||||||||||  | || ||||| | ||||||||||||||||||||| ||||||  ||||||||||| ||||||| ||| | | |||||||||||||    
T  31330562 tacttaaatggatcctaggtatacacatcactcatttataattttttaatggtagtacctaataagcactcaatccctccaacccaacatttcacacaaa 31330463  T
Q  131 tttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||| |  |||||||||||||||||||| | ||||||||||||||||||||    
T  31330462 tttcttaaatgagacgtactaatcaactatcaataagtatatatcattacatttcaatt 31330404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 17257662 - 17257575
Alignment:
Q  316 tcaatattataaaatgcattgttttattaaaagataaaggaaaaatcgaaatgtcatgggtatattgaaatcaatagaacaaatttga 403  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  17257662 tcaatattataaaatgcattgttttattaaaagaaaaaggaaaaatcgaaatgtcatgattatattgaaatcaatagaccaaatttga 17257575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 36657827 - 36657997
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||| | |||||| ||| ||||||||| |||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||| |||| || |||    
T  36657827 gagacacccatttttgggttcttaaatgggtctcatgtgtacacattgctcatttataattttttaatagtactatctaataagcactcaatcactccaa 36657926  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacattt 184  Q
     | || || ||||||||| ||||||||||  |   |||||||||||||||||||||||||| ||||| ||||    
T  36657927 cccag-atctcacacaaagttcttaaatgggacccactaatcaactatcaataattttataccattatattt 36657997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 47841370 - 47841536
Alignment:
Q  23 ttttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcattt 122  Q
    ||||| ||||||||||||  || ||  ||||||| | |||||||||||||||| |||||||||||| ||||||| ||| ||||||| ||| | ||||| |    
T  47841370 tttttaggtacttaaatgagtcccacatgtacacataactcatttataattttgtaatagtagtatttaataagtactcaatccctccaaccaagcatct 47841469  T
Q  123 cacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||| ||| ||||||||||| |   || |||||||||||||||| |||||| ||| |||| ||||||    
T  47841470 cacataaagttcttaaatgagactcacaaatcaactatcaataactttataccatcacatatcaatt 47841536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 6068223 - 6068107
Alignment:
Q  72 ttttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataatttta 171  Q
    ||||||||||||||||| ||||||| ||||||| ||||||| |||  || ||| |||||||| |||||| ||||  |||||||||||| ||||||||||     
T  6068223 ttttttaatagtagtatctaataagtacttaattccttcaa-ctaagatctcatacaaattttttaaataaaatccactaatcaactaccaataattttc 6068125  T
Q  172 tatcattacatttcaatt 189  Q
    ||||||||||||||||||    
T  6068124 tatcattacatttcaatt 6068107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 43302094 - 43302232
Alignment:
Q  50 tgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatac 149  Q
    ||||||| | ||||||||||||||||||||||||||||  ||||||  ||| |||| || |||||||| || ||||||| | ||||||||||  |   ||    
T  43302094 tgtacacataactcatttataattttttaatagtagtacctaataaatactcaatcactccaatctag-atctcacacataattcttaaatgggacccac 43302192  T
Q  150 taatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  43302193 taatcaactatcaataactttatatcattatatttcaatt 43302232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 4958391 - 4958248
Alignment:
Q  49 gtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagca---tttcacacaaatttcttaaatgaaat 145  Q
    |||||||| | | ||||||||||||||||||||||||||| |||||| |||| ||||||| ||| | | ||   | |||||||| ||||||||||||||     
T  4958391 gtgtacacatcattcatttataattttttaatagtagtatctaataaacactcaatccctccaaccgaacaacatctcacacaactttcttaaatgaaac 4958292  T
Q  146 atactaatcaactatcaataattttatatcattacatttcaatt 189  Q
      || ||||||||||||| || ||||||||||||||| ||||||    
T  4958291 ccacaaatcaactatcaacaactttatatcattacatatcaatt 4958248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 19987337 - 19987176
Alignment:
Q  22 attttttggtacttaaatggatc-tcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcat 120  Q
    ||||||| ||| ||||||||||| |||  ||||||| | | |||||||||||||||||||||||||| |||||||| || | |||||| ||| | | |||    
T  19987337 attttttagtatttaaatggatcctcacatgtacacatcattcatttataattttttaatagtagtacataataagtacatgatccctccaacccaacat 19987238  T
Q  121 ttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacat 182  Q
     ||||||||| ||||||||||  |  ||| |||| ||||||||||| |||| ||||||||||    
T  19987237 ctcacacaaagttcttaaatgggacctacaaatcgactatcaataactttaaatcattacat 19987176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 23156230 - 23156354
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||| |||| |||||||||||  ||||||||||||||||||| ||| |||| || ||||||||| ||||||||||| |   | ||||||||||||||    
T  23156230 atttatagttttataatagtagtagctaataagcacttaatccctccaacctag-atctcacacaaagttcttaaatgagacccattaatcaactatcaa 23156328  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||| ||||||||| ||||||| ||||    
T  23156329 taactttatatcactacattttaatt 23156354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 29914340 - 29914517
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttt-taatagtagtatataataagcacttaatcccttca 111  Q
    |||||||  ||||||||||| |||||||  ||||| || ||| | | ||| ||||||||||||| |||||||| ||  |||||| |||||||||||| ||    
T  29914340 gagacattcattttttggtatttaaatgagtctcaagtttacgcatcacttatttataatttttataatagtaatacctaataaacacttaatccctcca 29914439  T
Q  112 atctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |  || ||| ||||||||||||| ||||||  |    |||||||||||||||||| ||||||| ||||||||||||||    
T  29914440 acttaacatctcacacaaatttcataaatgggactcgctaatcaactatcaataactttatattattacatttcaatt 29914517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 36656546 - 36656722
Alignment:
Q  12 agagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttca 111  Q
    |||||| || |||||||||||||||||||| |||||  | || |  | |||||||||||||||||||||||| |||| ||||||  ||| ||||||| ||    
T  36656546 agagacctctattttttggtacttaaatgggtctcacttatatatatcactcatttataattttttaatagtggtatctaataaatactcaatccctcca 36656645  T
Q  112 atctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    || ||| || ||| ||||| ||||||||||| |   |  |||||||||| ||||| ||||||||||||||| ||||||    
T  36656646 at-tagtatctcatacaaagttcttaaatgagacccataaatcaactattaataactttatatcattacatatcaatt 36656722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 5513785 - 5513961
Alignment:
Q  14 agacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataatttt-ttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||||||||  | || |||||||||||||| |||||||| | ||| |||||||||||| ||||||||| ||| |||||||  || ||||||| |||    
T  5513785 agacatcaattttcagatatttaaatggatctcacgtgtacacatcacttatttataatttttttaatagtaatatctaataagttctcaatccctccaa 5513884  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     |  | || |||| ||||||| |||||||| |   ||||||| || |||||||| ||||||| ||||||||||||||    
T  5513885 ccccgtatctcacgcaaattttttaaatgagactcactaatcgaccatcaataactttatataattacatttcaatt 5513961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 36481992 - 36482120
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    ||||| || |||| ||||||||||||||| ||||||||||| |||| ||  || | || || ||||||||| ||||||||||| ||  ||||||||||||    
T  36481992 actcacttgtaatattttaatagtagtatttaataagcactcaatcactctaacccag-atatcacacaaagttcttaaatgagattcactaatcaacta 36482090  T
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    ||||||| ||||||| |||| |||||||||    
T  36482091 tcaataactttatataattatatttcaatt 36482120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 39853943 - 39853779
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||||||| ||||||||  || ||  ||||||| ||||| ||||||   ||||||||  |||||| ||||||| ||| |||| || ||| |||||||     
T  39853943 attttttggttcttaaatgagtcacacatgtacacattacttatttat---tttttaattatagtatgtaataagaactcaatcgctccaacctagcatc 39853847  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||| ||||||||||||||  |   ||||||||||||||||||| |||||| ||||| |||||||||    
T  39853846 tcacaaaaatttcttaaatgggacccactaatcaactatcaataactttataccattatatttcaatt 39853779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 31322250 - 31322334
Alignment:
Q  12 agagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataag 96  Q
    ||||||||| |||||||||||||||||||| || ||| ||||||| | |||||||||||||||||||| |||||||  |||||||    
T  31322250 agagacatccattttttggtacttaaatgggtcacatatgtacacatcactcatttataattttttaacagtagtacctaataag 31322334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 44441757 - 44441601
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatt 132  Q
    ||||||||| |||||  ||||||| | ||||||||||||||||||||  ||||||  ||||||| ||| |||  || ||| | ||||| ||||| |||||    
T  44441757 cttaaatgggtctcaaatgtacacatcactcatttataattttttaacggtagtacctaataagaactcaatatctccaacccagcatctcacaaaaatt 44441658  T
Q  133 tcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||| |   |||||||||||||||| || |  ||||||||||| |||||||    
T  44441657 tcttaaatgagacccactaatcaactatcaacaactggatatcattacacttcaatt 44441601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 48767127 - 48767271
Alignment:
Q  48 tgtgtacacgttactcatttataatttttt-aatagtagtatataataagc-acttaatcccttcaatctagcatttcacaca-aatttcttaaatgaaa 144  Q
    ||||||||| | |||||||||||||||||| ||||||||||  |||||||| ||| ||| |||  || |||| || ||||| | |||||||||||||| |    
T  48767127 tgtgtacacatcactcatttataatttttttaatagtagtacctaataagccactcaatacctctaacctagtatctcacaaataatttcttaaatgaga 48767226  T
Q  145 tatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
       ||||||||||||||||||| ||||||||||| ||||||||||    
T  48767227 cccactaatcaactatcaataactttatatcattgcatttcaatt 48767271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 36901033 - 36901151
Alignment:
Q  72 ttttttaatagtagtatataataagcactt-aatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataatttt 170  Q
    ||||||||||||||||  ||||||  | || ||||||| ||| | || || ||||| ||||||||||||||| |  ||||||||||||||||||||||||    
T  36901033 ttttttaatagtagtacctaataaagaattcaatccctccaaccgagtatctcacaaaaatttcttaaatgagacctactaatcaactatcaataatttt 36901132  T
Q  171 atatcattacatttcaatt 189  Q
    ||||||||| |||| ||||    
T  36901133 atatcattatattttaatt 36901151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 41015441 - 41015323
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    |||||||||||||||||||||| || ||| ||||||| ||||||||| |  |||| ||||||||||||||| || | |||||| |   | ||||||||||    
T  41015441 actcatttataattttttaataataatatctaataagtacttaatccatcaaatccagcatttcacacaaaattttcaaatgagactcattaatcaacta 41015342  T
Q  160 tcaataattttatatcatt 178  Q
    ||||||  |||||||||||    
T  41015341 tcaatatctttatatcatt 41015323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 38360778 - 38360897
Alignment:
Q  68 ataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataat 167  Q
    ||||||||||||||||||||| ||||||||||| |||  || ||||| | ||| |||||||||||| ||||||| |||  ||| | |||||||||||||     
T  38360778 ataattttttaatagtagtatctaataagcactcaat--ctccaatccaacatctcacacaaattttttaaatggaattcacttaccaactatcaataac 38360875  T
Q  168 tttatatcattacatttcaatt 189  Q
    | ||||  || |||||||||||    
T  38360876 tatatactatcacatttcaatt 38360897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 13057947 - 13057882
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaa 187  Q
    ||||||||||||||||||||  |  |||||||||||||||||||| |||||||||| |||||||||    
T  13057947 tcacacaaatttcttaaatgtgacttactaatcaactatcaataactttatatcataacatttcaa 13057882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 48615262 - 48615399
Alignment:
Q  49 gtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatata 148  Q
    ||||||||  ||||||||| |||||||||||   |||||  |||||| || | ||| ||| ||| | ||||  |||||||||||||||||| | |||  |    
T  48615262 gtgtacacaatactcatttttaattttttaacgttagtacctaataaacattcaattcctccaagccagcacctcacacaaatttcttaaacggaatcca 48615361  T
Q  149 ctaatcaactatcaataattttatatcattacatttca 186  Q
     |||||| |||||||||| |||||||||||||||||||    
T  48615362 ttaatcatctatcaataactttatatcattacatttca 48615399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 2008666 - 2008599
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||| ||     |||||||||||||||||||||||| |||||||||||||||    
T  2008666 tcacacaaatttcttaaatggaacccgttaatcaactatcaataattttataccattacatttcaatt 2008599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 17983522 - 17983411
Alignment:
Q  72 ttttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataatttta 171  Q
    |||||||||| || || ||||||| |||||||||||||||| | | || ||||||||||| | |||||| | ||  | ||||||  |||||||| |||||    
T  17983522 ttttttaataatattacataataaacacttaatcccttcaacccaacacttcacacaaatgttttaaataagatccattaatcacatatcaatactttta 17983423  T
Q  172 tatcattacatt 183  Q
    ||||||||||||    
T  17983422 tatcattacatt 17983411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 46282120 - 46282234
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    |||||||||||||||||||   ||  |||||| ||||  |||||| ||| | ||||| |||  |||||||||||||||| |   ||||||||||||||||    
T  46282120 atttataattttttaatagcgatacctaataaacactagatccctccaacc-agcatctcattcaaatttcttaaatgagacccactaatcaactatcaa 46282218  T
Q  164 taattttatatcatta 179  Q
    ||||||||||||||||    
T  46282219 taattttatatcatta 46282234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 25307473 - 25307597
Alignment:
Q  65 tttataattttttaatagtagtatataataagcacttaatccct-tcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||||||||| |||| ||| ||||| | |||| || | || ||| ||||  ||||||||||||||||||| ||  || ||||||| |||||    
T  25307473 tttataattttttaatagttgtatctaacaagcattcaatctctctaaaccta-cattcgacacaaatttcttaaatgagatccacaaatcaacaatcaa 25307571  T
Q  164 taattttatatcattacatttcaatt 189  Q
    |||  |||||||||||||| ||||||    
T  25307572 taaacttatatcattacatctcaatt 25307597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 37698610 - 37698498
Alignment:
Q  76 ttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatc 175  Q
    ||||||||||||  ||||||||||| ||||||| ||| | |  || ||||||||| |||||||||||||   |||||| ||||||||| || ||||||||    
T  37698610 ttaatagtagtacctaataagcactcaatccctccaacccaa-atctcacacaaaattcttaaatgaaacccactaataaactatcaacaactttatatc 37698512  T
Q  176 attacatttcaatt 189  Q
    | ||||||| ||||    
T  37698511 actacattttaatt 37698498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 19594150 - 19594095
Alignment:
Q  25 ttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaat 80  Q
    ||||||||||||||||| |||||||||||||| | |||||| |||||||| |||||    
T  19594150 ttttggtacttaaatggttctcatgtgtacacctcactcatatataatttcttaat 19594095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 19752828 - 19752883
Alignment:
Q  25 ttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaat 80  Q
    ||||||||||||||||| |||||||||||||| | |||||| |||||||| |||||    
T  19752828 ttttggtacttaaatggttctcatgtgtacacctcactcatatataatttcttaat 19752883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 19753042 - 19753075
Alignment:
Q  156 actatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||||||||||||||||||    
T  19753042 actatcaataattttatatcattacatttcaatt 19753075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 38224163 - 38223992
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    ||||| || |||||| | ||||||||||  |||||| ||||||| | | | ||||| |||||||| || ||||||  ||||||| ||| |||||||||||    
T  38224163 gagacctccatttttggatacttaaatgagtctcatatgtacacatgatttatttagaattttttgatggtagtacctaataagtactcaatcccttcaa 38224064  T
Q  113 tctagcatttcacacaaatttctt--aaatgaaatatactaatcaactatcaataattttatatcattacat 182  Q
     | || || ||| ||||| |||||  |||||| |   |  ||||||||||||||||  ||||||||||||||    
T  38224063 cccagtatctcaaacaaagttcttaaaaatgagactcaaaaatcaactatcaataacattatatcattacat 38223992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 4874941 - 4874980
Alignment:
Q  150 taatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  4874941 taatcaactatcaataactttatatcattacattttaatt 4874980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 30859745 - 30859683
Alignment:
Q  25 ttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagta 87  Q
    |||||||| |||||||| ||| | ||||| |  | ||||||||||||||||||||||||||||    
T  30859745 ttttggtatttaaatgggtcttacgtgtatatatcactcatttataattttttaatagtagta 30859683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 41172570 - 41172623
Alignment:
Q  135 ttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaat 188  Q
    |||||||| | | ||||||||| ||||| ||| |||||||||||||||||||||    
T  41172570 ttaaatgagacacactaatcaattatcattaactttatatcattacatttcaat 41172623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 44441360 - 44441401
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||    
T  44441360 actaatcaactatcaataactttatatcactacattttaatt 44441401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 46748101 - 46748141
Alignment:
Q  149 ctaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||| ||||||| ||||||||||||||| ||||||    
T  46748101 ctaatcaactgtcaataactttatatcattacatatcaatt 46748141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 10180569 - 10180727
Alignment:
Q  30 gtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaa 129  Q
    |||||||||||||||||| |||||||  | ||||||||||||||||||||||||||||  ||||||| ||| ||| ||| ||| ||||||| | ||||||    
T  10180569 gtacttaaatggatctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagaactcaatgcctccaacctagcatcttacacaa 10180668  T
Q  130 atttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||| ||  || |||||||||||||||| ||||||||||||||| ||||||    
T  10180669 atttcttaaatgagatccac-aatcaactatcaataactttatatcattacatatcaatt 10180727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 12447605 - 12447428
Alignment:
Q  11 cagagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttc 110  Q
    |||||||||| |||||| | ||||||||||| ||||| | |||||  | ||| ||||||||||||||||||||||| ||||||||| ||| ||||| ||     
T  12447605 cagagacatccatttttggatacttaaatgg-tctcacgagtacaaatcacttatttataattttttaatagtagtctataataagaactcaatcctttt 12447507  T
Q  111 aatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    || | ||||| ||||| ||||||||||||| | |   ||||||||||||||||||| ||||||||||||||||||||||    
T  12447506 aacccagcatctcacaaaaatttcttaaataagacccactaatcaactatcaataactttatatcattacatttcaatt 12447428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 26699192 - 26699027
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| |||||| |||||||||||||||| ||  ||||||| | ||||  |||||| |||||||||||| ||| ||||||| ||| ||||  |||||    
T  26699192 gagacatccatttttgggtacttaaatggatcccacatgtacacatcactcgcttataaatttttaatagtaatatctaataagaactcaatcatttcaa 26699093  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcatt 178  Q
    | |||||||||||||||||||||||||||| | | |||||||||| || ||||| |||||||||||    
T  26699092 tatagcatttcacacaaatttcttaaatgagacacactaatcaacgattaataactttatatcatt 26699027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 44500662 - 44500503
Alignment:
Q  30 gtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaa 129  Q
    |||||||||||||||| | ||||||| || ||||||||||||| |||||||| |||||| |||||||||||||||||||  ||   ||| | ||||||||    
T  44500662 gtacttaaatggatcttacgtgtacatgtcactcatttataatattttaataatagtatttaataagcacttaatccctgaaactcagcctctcacacaa 44500563  T
Q  130 atttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     ||| | |||| | ||  |||||||||||||||||| ||||||| |||||||||||||||    
T  44500562 ttttttcaaattagattcactaatcaactatcaatagttttataacattacatttcaatt 44500503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 35331922 - 35332097
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||| ||| ||||||||||  |||||||  || || || ||||| ||||| ||||||| |||||||||||||||| |||||||||||| |||| || |||    
T  35331922 gagatatccattttttggttgttaaatgagtcccacgtatacacattacttatttatacttttttaatagtagtacataataagcactcaatcactccaa 35332021  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     | || || ||||||||| ||||||||||  ||  ||||||||||||||||||| |||||||||||| |||||||||    
T  35332022 cccag-atctcacacaaagttcttaaatgggatccactaatcaactatcaataactttatatcattatatttcaatt 35332097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 35382338 - 35382477
Alignment:
Q  49 gtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatata 148  Q
    |||||||| | | |||||||||||||||||||||||||| |||||||||| | |||| || ||| | || |||||||||||| ||||||||||| | | |    
T  35382338 gtgtacacctcattcatttataattttttaatagtagtacataataagcattcaatcactccaacccag-atttcacacaaagttcttaaatgagacaca 35382436  T
Q  149 ctaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  35382437 ctaatcaactatcactaactttatatcattatatttcaatt 35382477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 39055347 - 39055172
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||| | |||||| ||| ||||||||| ||||| | |||||| | |||||||||||||||||||||| |||||  ||||||| | | ||||||| |||    
T  39055347 gagacacccatttttaggttcttaaatgggtctcacgcgtacacatcactcatttataattttttaatattagtacctaataagtattaaatccctccaa 39055248  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
       || || ||||||||| |||||||||||||   ||||||||||||||||||| ||||||||||||||||| ||||    
T  39055247 ctcag-atctcacacaaagttcttaaatgaaacccactaatcaactatcaataactttatatcattacattttaatt 39055172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 2396485 - 2396310
Alignment:
Q  12 agagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttca 111  Q
    ||||||||| |||||| ||| ||||||||  || || |||||||| | ||| ||||||||||| ||||||||||||  ||||||| ||| |||| || ||    
T  2396485 agagacatccatttttgggttcttaaatgagtcccacgtgtacacatcacttatttataatttgttaatagtagtacctaataagaactcaatcgct-ca 2396387  T
Q  112 atct-agcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaa 187  Q
    | || ||||| ||||| |||||||||||||| ||   ||||||||||||||||||| ||||||||| ||||||||||    
T  2396386 aactcagcatctcacaaaaatttcttaaatggaacccactaatcaactatcaataactttatatcagtacatttcaa 2396310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 52199988 - 52199813
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||| | |||||| ||| ||||||||| || || ||| |||||| ||||||||||||||||||||||||||||  ||||||||| | |||| || |||    
T  52199988 gagacacccatttttgggttcttaaatgggtcccacgtgcacacgtcactcatttataattttttaatagtagtacctaataagcattcaatcactccaa 52199889  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     | || || ||||||||| ||||||||||  |   ||||||| ||||||||||||| |||||||||| |||||||||    
T  52199888 cccag-atctcacacaaagttcttaaatgggacccactaatccactatcaataattatatatcattatatttcaatt 52199813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 23359238 - 23359112
Alignment:
Q  62 tcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatc 161  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| || ||| |||| || ||||||||| ||||||||||| ||  || |||||||||||    
T  23359238 tcatttataattttttaatagtagtatctaataagcactcaatcactccaacctag-atctcacacaaagttcttaaatgagatccacaaatcaactatc 23359140  T
Q  162 aataattttatatcattacatttcaatt 189  Q
    ||||| ||||||| || | |||||||||    
T  23359139 aataactttatattataatatttcaatt 23359112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 39629183 - 39629307
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||||||||||||||| ||||||||||| |||| || ||| | || ||  |||||||| ||||||||||| ||  ||||| ||||||||||    
T  39629183 atttataattttttaatagtagtatctaataagcactaaatcactccaacccag-atcacacacaaagttcttaaatgagatccactaaacaactatcaa 39629281  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||||||||||||||||  ||||||||    
T  39629282 taattttatatcattatttttcaatt 39629307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 35144564 - 35144398
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    ||||||||||| |||||||| ||||| |||||||  | | | ||||||||||||||| ||||||||| ||||||||| | ||||||| ||| | || ||     
T  35144564 attttttggtatttaaatgggtctcacgtgtacatatcaattatttataattttttagtagtagtatctaataagcattcaatccctccaacccag-atc 35144466  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||| |||||||||||||||  |||  ||| || ||| || |||||||||||| |||||||||||||||    
T  35144465 tcatacaaatttcttaaatagaatccactgataaaccattaataattttataccattacatttcaatt 35144398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 42426850 - 42426957
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaattt 133  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||  ||| ||||||| ||| |||  || ||||| ||| ||    
T  42426850 ttaaatggatctcacgtgtacacgttacttatttataattttttaatagtagtatctaataaaaactcaatccctccaacctaatatctcacaaaaaatt 42426949  T
Q  134 cttaaatg 141  Q
    ||||||||    
T  42426950 cttaaatg 42426957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 35308941 - 35309099
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa 130  Q
    ||||||||||  ||||| | |||||||| ||| ||||||||||||||||||||| ||| ||||||| ||| |||||||  |  ||||||  ||||||||     
T  35308941 tacttaaatgagtctcacgcgtacacgtcacttatttataattttttaatagtaatatctaataagtactcaatccctctagcctagcaactcacacaat 35309040  T
Q  131 tttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||| |||||||  |   ||||||||||||||||||| |||||||||||| |||| ||||    
T  35309041 ttttttaaatgggactcactaatcaactatcaataactttatatcattatattttaatt 35309099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 822369 - 822493
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||| ||||||||||||||||| ||||||| ||| ||||||| ||| | || || ||||||||| ||||||||||| | | | ||||||||||||||    
T  822369 atttatagttttttaatagtagtatctaataagtactcaatccctccaacccag-atctcacacaaagttcttaaatgagacacattaatcaactatcaa 822467  T
Q  164 taattttatatcattacatttcaatt 189  Q
    |||  |||||||| ||||||||||||    
T  822468 taacattatatcactacatttcaatt 822493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 49211163 - 49211037
Alignment:
Q  64 atttataatttttt-aatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatca 162  Q
    |||||||||||||| ||||||||||| ||||||| |||  |||||| ||| ||||||| ||||| ||||| ||||||||| |   | ||||||| |||||    
T  49211163 atttataatttttttaatagtagtatctaataagaactctatccctccaacctagcatctcacaaaaattccttaaatgagacccattaatcaattatca 49211064  T
Q  163 ataattttatatcattacatttcaatt 189  Q
    |||| ||||||||||||||||| ||||    
T  49211063 ataactttatatcattacattttaatt 49211037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 53096599 - 53096720
Alignment:
Q  66 ttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaata 165  Q
    ||||||||||||||||||| ||  ||||||| ||| |||||||| || | | ||| ||||||||||||||||||||  |   ||||||||||||||||||    
T  53096599 ttataattttttaatagtaatacttaataagaactcaatccctttaacccaacatctcacacaaatttcttaaatgggaccaactaatcaactatcaata 53096698  T
Q  166 attttatatcattacatttcaa 187  Q
    | ||||||| ||||||| ||||    
T  53096699 actttatattattacatatcaa 53096720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 51655295 - 51655145
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcactta---atcccttcaatctagcatttcacacaaa 130  Q
    |||||||| | ||| ||||| || | ||||||||||||| |||||| |||||||| ||||||| | | |   |||| ||||| | ||||| | |||||||    
T  51655295 ttaaatgggtatcacgtgtaaacatcactcatttataatattttaacagtagtatctaataagaattgatcaatcctttcaacccagcatcttacacaaa 51655196  T
Q  131 tttcttaaatgaaatatactaatcaactatcaataattttatatcattaca 181  Q
    ||| |||||||| |   ||||||||||||||||||||||||||||||||||    
T  51655195 tttattaaatgagaccaactaatcaactatcaataattttatatcattaca 51655145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 30865972 - 30865901
Alignment:
Q  118 catttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| ||||||||||||||| |   ||||||||||||||||||| ||||||||||||||||||||||    
T  30865972 catttcacataaatttcttaaatgagactcactaatcaactatcaataactttatatcattacatttcaatt 30865901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 45834033 - 45833907
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||||||||||  |  || |||||| ||||| |||||||| | ||||||||||||||||||||||||| ||| ||||||||||| |||| || |||    
T  45834033 gagacatcaatttttgaggtctaaaatgggtctcacgtgtacacatcactcatttataattttttaatagtaatat-taataagcactcaatcactccaa 45833935  T
Q  113 tctagcatttcacacaaatttcttaaatg 141  Q
     | || || ||||||||| ||||||||||    
T  45833934 cccag-atctcacacaaagttcttaaatg 45833907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 25435888 - 25436017
Alignment:
Q  59 tactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaact 158  Q
    |||||||||||||||| |||||| |||||| ||||||| | | |||| |||||| | | ||| |||||| ||||| |||||||  ||  ||||||| | |    
T  25435888 tactcatttataatttattaataatagtatttaataagtattcaatctcttcaacccaacatctcacac-aattttttaaatgggatcgactaatccatt 25435986  T
Q  159 atcaataattttatatcattacatttcaatt 189  Q
    |||||||| |||||| |||||||||||||||    
T  25435987 atcaataactttatagcattacatttcaatt 25436017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 2574100 - 2574163
Alignment:
Q  126 acaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||  |||  ||||||||||||| ||||| ||||||||||||||||||||||    
T  2574100 acaaatttcttaaatagaattcactaatcaactattaataactttatatcattacatttcaatt 2574163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 8825098 - 8824973
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    |||||||||||||||||||   ||||||| ||||||| | | |||  |||||||| |  || | ||| ||| |||||||||| ||  |||||||||||||    
T  8825098 actcatttataatttttta---gtagtatctaataagtattcaattacttcaatccat-atcttacataaaattcttaaatggaacctactaatcaacta 8825003  T
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    ||||||| |||||||||||| |||||||||    
T  8825002 tcaataactttatatcattatatttcaatt 8824973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 28897759 - 28897635
Alignment:
Q  30 gtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaa 129  Q
    |||||||||||  ||||| ||||| |  | |||||||||||||||||||| | |||||  ||||||||||| ||| ||| |||  || ||||||||||||    
T  28897759 gtacttaaatgagtctcacgtgtatatatcactcatttataattttttaaaattagtaattaataagcactcaattcctccaa--taacatttcacacaa 28897662  T
Q  130 atttcttaaatgaaatatactaatcaa 156  Q
    | ||||||||||| | | |||||||||    
T  28897661 aattcttaaatgagacacactaatcaa 28897635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 11347116 - 11346990
Alignment:
Q  67 tataattttttaatagtagtatataataagcacttaatcccttcaatcta----gcatttcacacaaatttcttaaatgaaatatactaatcaactatca 162  Q
    |||||||||||||||||||||  ||||||| | | ||||||| ||| | |    |||| ||||||||||||||||||||| |   | ||||||| ||| |    
T  11347116 tataattttttaatagtagtacctaataagtattcaatccctccaaccaacccagcatctcacacaaatttcttaaatgagacgcattaatcaattatta 11347017  T
Q  163 ataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| |||| ||||    
T  11347016 ataattttatatcattatattttaatt 11346990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 22628607 - 22628478
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    |||| |||||||||||||||||| |||| ||||||| |||| |||| ||   | | |  ||  ||||||||||| |||||||  |   ||||||||||||    
T  22628607 actcgtttataattttttaataggagtacataataaacactcaatctctctgacccaatatcacacacaaattttttaaatgggactcactaatcaacta 22628508  T
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    ||||||| ||||||||||||||||| ||||    
T  22628507 tcaataactttatatcattacattttaatt 22628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 23607518 - 23607426
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcaca 126  Q
    |||||||| ||||| || ||||| ||||| ||||||||||||||||||||||||| || |||| ||| |||| ||  |||| ||||| |||||    
T  23607518 ttaaatgggtctcacgtatacacattacttatttataattttttaatagtagtatctattaagaactcaatctctctaatccagcatctcaca 23607426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 54018476 - 54018563
Alignment:
Q  102 aatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||| ||||| ||| | ||| |||||||| ||||||||||   |||||| |||| ||||||||||||||| |||| |||||||||    
T  54018476 aatccctccaatcgagcgtctcagacaaattttttaaatgaaacccactaataaactgtcaataattttatattattatatttcaatt 54018563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 38864966 - 38865086
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||| || ||| | || || ||||||||| ||||||   |  ||  || |||||||||    
T  38864966 actcatttataattttttaatagtagtacttaaaaagcacttaatcactccaacccag-atctcacacaaagttctta---gggatccaccaatcaacta 38865061  T
Q  160 tcaataattttatatcattacattt 184  Q
    |||| ||||||||||| ||| ||||    
T  38865062 tcaacaattttatatcgttatattt 38865086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 15839720 - 15839777
Alignment:
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcatta 179  Q
    |||||| ||||| |||||||| ||||| |||||| |||||||||| ||||||||||||    
T  15839720 tcacacgaattttttaaatgagatatattaatcatctatcaataactttatatcatta 15839777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 27923228 - 27923166
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagta 84  Q
    |||||| | |||||||||  ||| ||||||||||| ||| |||||||||| ||||||||||||    
T  27923228 atttttggatacttaaattaatcacatgtgtacacattattcatttataaatttttaatagta 27923166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 28909418 - 28909500
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataa 95  Q
    |||||||  |||||| |||  ||||||| |||||| ||||| || |  ||||||||||||||||||| |||||||| ||||||    
T  28909418 gagacatttatttttgggttattaaatgaatctcacgtgtatacatcgctcatttataattttttaacagtagtatctaataa 28909500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 30866051 - 30865978
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataag 96  Q
    ||||||||||||||||||||  | ||| |||| || | ||||| ||||||||||||||||||||||  |||||||    
T  30866051 attttttggtacttaaatggc-cacatatgtatacatcactcacttataattttttaatagtagtacctaataag 30865978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 25424376 - 25424405
Alignment:
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||||||||||||||    
T  25424376 tcaataattttatatcattacatttcaatt 25424405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 6982484 - 6982516
Alignment:
Q  150 taatcaactatcaataattttatatcattacat 182  Q
    |||||||||||||||||| ||||||||||||||    
T  6982484 taatcaactatcaataatattatatcattacat 6982516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 41115998 - 41115866
Alignment:
Q  47 atgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaata 146  Q
    |||||||||  | ||| ||||||| ||||| ||||||||||| |||||| || | ||||||   || ||| ||| ||||| ||| |||||||| || ||     
T  41115998 atgtgtacatatcacttatttatagtttttaaatagtagtatctaataaacattcaatcccacaaacctaacatctcacaaaaacttcttaaacgagatc 41115899  T
Q  147 tactaatcaactatcaataattttatatcatta 179  Q
     |||| ||| |||||||||| ||||||| ||||    
T  41115898 aactactcatctatcaataactttatattatta 41115866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 41963674 - 41963710
Alignment:
Q  150 taatcaactatcaataattttatatcattacatttca 186  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  41963674 taatcatctatcaataattttatatcattatatttca 41963710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 41212122 - 41211993
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    |||||||||||||||| |||||||||||  ||||||||| | ||||||| ||||| | ||| ||| |||| |||||||||||| | ||||||||||||||    
T  41212122 actcatttataattttgtaatagtagtacctaataagcagtaaatccctccaatcgaacatctcatacaagtttcttaaatgagacatactaatcaacta 41212023  T
Q  160 tcaataattttatatcattacatttcaatt 189  Q
    ||||||| ||||||||||||||||| ||||    
T  41212022 tcaataactttatatcattacattttaatt 41211993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 44110999 - 44110843
Alignment:
Q  30 gtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaa 129  Q
    |||||||||||| || || |||||||| | | ||||||||||||||||||||||| ||  ||| || ||  |||||||||||||||| || ||| |||||    
T  44110999 gtacttaaatgggtcacacgtgtacacataattcatttataattttttaatagtattacctaacaaacatctaatcccttcaatctatcacttcgcacaa 44110900  T
Q  130 atttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttca 186  Q
    |||||||||| || ||    |||||| ||||||||||||| ||||||||||||||||    
T  44110899 atttcttaaacgagattctttaatcatctatcaataatttcatatcattacatttca 44110843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 13755100 - 13755262
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    ||||||| ||||||||| || || || |||||||| | ||||||||||||||||||||||||||||  ||||||| ||| |||||||  || |  ||       
T  13755100 attttttagtacttaaacgggtcccacgtgtacacatcactcatttataattttttaatagtagtacttaataagaactcaatccctctaaccctgc--- 13755196  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaa 187  Q
    ||||||||||||||||||||  |   |  |||||||||||||||| ||||||||| ||||| ||||    
T  13755197 tcacacaaatttcttaaatgggacccaaaaatcaactatcaataactttatatcagtacatatcaa 13755262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 45603382 - 45603501
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||||||||||||||||  ||||| || ||||| | | |||||||||||||| ||||| |||||  |||||| |||| |||||||| |||| | |||     
T  45603382 attttttggtacttaaatgagtctcacgtatacacatcattcatttataattttataataatagtacttaataaacactcaatcccttaaatccaacatc 45603481  T
Q  122 tcacacaaatttcttaaatg 141  Q
    |||||||||||| |||||||    
T  45603482 tcacacaaattttttaaatg 45603501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 46049070 - 46048900
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataatttttt-aatagtagtatataataagcacttaatcccttca 111  Q
    ||||| || ||||||  |||||||||||| |||||  |||| || |||||||||||||||||||| |||| |||||  ||||||| |   ||||||| ||    
T  46049070 gagacctccatttttaagtacttaaatgggtctcacatgtaaacattactcatttataatttttttaatattagtacctaataagtatccaatccctcca 46048971  T
Q  112 atctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacat 182  Q
    |   ||||| ||||||||| |||||||||| ||   || |||||||||||||||| |||||| ||||||||    
T  46048970 actcagcatctcacacaaagttcttaaatggaactcacaaatcaactatcaataactttataccattacat 46048900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 52995695 - 52995756
Alignment:
Q  118 catttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcatta 179  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||    
T  52995695 catttcacacaaatttgttaaatgagacatactaatcaactatcaataactttatatcatta 52995756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 13768501 - 13768663
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    ||||||| ||||||||| || || || |||||||| | ||||||||||||||||||||||||||||  ||||||| ||| ||||||     |||| || |    
T  13768501 attttttagtacttaaacgggtcccacgtgtacacatcactcatttataattttttaatagtagtacttaataagaactcaatccc-----tctaacact 13768595  T
Q  122 --tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaa 187  Q
      | ||||||||||||||||||  |   || |||||||||||||||| ||||||||| ||||| ||||    
T  13768596 gcttacacaaatttcttaaatgggacccacaaatcaactatcaataactttatatcagtacatatcaa 13768663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 36902262 - 36902437
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||  |||||| | || |||||||| || || ||| |||| | |||| ||| ||||||||||| |||| ||| ||||||  ||| ||| | |||||    
T  36902262 gagacattcatttttggatatttaaatgggtcacacgtgaacacataactcttttttaattttttaacagtaatatctaataaatactcaatactttcaa 36902361  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
       || || ||| ||||||||||||||||||||  ||||||||||||||||||| |||||||||||| |||| ||||    
T  36902362 ctcag-atctcaaacaaatttcttaaatgaaattcactaatcaactatcaataactttatatcattatattttaatt 36902437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 36619344 - 36619273
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagta 84  Q
    |||||||| |||||| ||||||||||||| ||||| |||||||| | ||| |||||||||||||||||||||    
T  36619344 gagacatctatttttaggtacttaaatgggtctcacgtgtacacatcactgatttataattttttaatagta 36619273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 26085232 - 26085077
Alignment:
Q  24 tttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttc 123  Q
    |||||||||||||||||| ||||| |||||||| | | ||||||||||||||||||| |||         ||  ||||||||||| ||| | || |||||    
T  26085232 tttttggtacttaaatgggtctcacgtgtacacatcattcatttataattttttaattgta---------aaatacttaatccctccaacccag-atttc 26085143  T
Q  124 acacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||| ||||||||||||||  | | ||| |||||| |||||||| |||||| ||||| |||||||||    
T  26085142 acataaatttcttaaatgggacacacttatcaaccatcaataactttataccattatatttcaatt 26085077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 33831981 - 33832046
Alignment:
Q  116 agcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattaca 181  Q
    ||||| ||||||||||||||| |||| |||  |||||||||||||||||||||| |||||||||||    
T  33831981 agcatctcacacaaatttctttaatggaatccactaatcaactatcaataatttcatatcattaca 33832046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 30595071 - 30595195
Alignment:
Q  65 tttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaat 164  Q
    ||||||||||||||||| |||||| ||||||| | | |||| || |||   | ||||||||| |||    |||||||| |   |||||||||||||||||    
T  30595071 tttataattttttaataatagtatctaataagaattcaatctctccaactcaacatttcacaaaaaaaatttaaatgagactcactaatcaactatcaat 30595170  T
Q  165 aattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||| ||||    
T  30595171 aattttatatcattacatttaaatt 30595195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 49109047 - 49109167
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    |||||||| |||| | ||||||||  ||||||||||| |||| ||  || | ||||| ||| ||| |||| ||||||| |||  ||||| ||||||||||    
T  49109047 atttataacttttcattagtagtacctaataagcactcaatctctcaaaccgagcatctcatacatattttttaaatggaatccactaaccaactatcaa 49109146  T
Q  164 taattttatatcattacattt 184  Q
    ||| |||||||||||||||||    
T  49109147 taaatttatatcattacattt 49109167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 54422796 - 54422740
Alignment:
Q  127 caaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatt 183  Q
    |||||||||||||||| |   ||||||||| ||||||||||||||||||||||||||    
T  54422796 caaatttcttaaatgagacccactaatcaattatcaataattttatatcattacatt 54422740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 52744658 - 52744729
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagta 84  Q
    |||||||  |||||||  ||||||||||  ||||| |||||||| ||||| |||||||||||||||||||||    
T  52744658 gagacattcattttttactacttaaatgagtctcacgtgtacacattacttatttataattttttaatagta 52744729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 55222676 - 55222601
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtat 88  Q
    |||||||  |||||| ||| ||||||||| ||||| |||||||  | | |||||||||||||||||||||||||||    
T  55222676 gagacattcatttttaggttcttaaatgggtctcacgtgtacatatcagtcatttataattttttaatagtagtat 55222601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 35539755 - 35539614
Alignment:
Q  33 cttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatt 132  Q
    ||||||||  ||||| |||||||| | | | ||||||||||||||||||||||||  |||||| ||||  ||| || ||| | || || ||||||||| |    
T  35539755 cttaaatgagtctcacgtgtacacatcatttatttataattttttaatagtagtacctaataaacactcgatcactccaaccaag-atctcacacaaagt 35539657  T
Q  133 tcttaaatgaaatatactaatcaactatcaataattttatatc 175  Q
    |||||||||  |   | ||||||||||||||||| ||||||||    
T  35539656 tcttaaatgggacccattaatcaactatcaataactttatatc 35539614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 46006047 - 46006191
Alignment:
Q  43 tctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatga 142  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||  |||||| || | |||| || ||| | || || | ||||||| |||||||||      
T  46006047 tctcacgtgtacacatcactcatttataattttttaatagtagtacctaataa-cattcaatcactccaacccag-atcttacacaaagttcttaaattt 46006144  T
Q  143 aatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     |   | ||||||||||||||||| |||||||||||| |||| ||||    
T  46006145 gacccagtaatcaactatcaataactttatatcattatattttaatt 46006191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 19900204 - 19900245
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  19900204 actaatcaactataaataattttatatcattacattttaatt 19900245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 29950771 - 29950816
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatc 105  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  29950771 actcatttatatttttttaatagtagtatctaataagcactcaatc 29950816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 29999925 - 29999970
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatc 105  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  29999925 actcatttatatttttttaatagtagtatctaataagcactcaatc 29999970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 47075620 - 47075661
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  47075620 actaatcaactatctataattttatatcattacatatcaatt 47075661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 36277750 - 36277866
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa-tttcttaaatgaaatatactaatcaactatca 162  Q
    ||||||||||||||||||||| ||| ||||||| | | ||| ||| |||   ||||| ||||||||| ||| |||||| |||   |||||| || |||||    
T  36277750 atttataattttttaatagtaatatctaataagtattcaattcctccaactcagcatctcacacaaatttttttaaattaaacccactaataaaatatca 36277849  T
Q  163 ataattttatatcatta 179  Q
    |||| ||||||||||||    
T  36277850 ataactttatatcatta 36277866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 3993620 - 3993581
Alignment:
Q  150 taatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  3993620 taatcaaccatcaataaatttatatcattacatttcaatt 3993581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 7933215 - 7933326
Alignment:
Q  77 taatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatca 176  Q
    |||||||| ||||||||| ||| | ||| ||||||| | ||||  | | |||||| |||||| |||||  || |||| |  ||||||||||||||||| |    
T  7933215 taatagtaatatataataggcattcaattccttcaaccgagcaccttatacaaatatcttaagtgaaacctattaattatttatcaataattttatatta 7933314  T
Q  177 ttacatttcaat 188  Q
    ||||||||||||    
T  7933315 ttacatttcaat 7933326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 55272909 - 55272863
Alignment:
Q  59 tactcatttataattttttaatagtagtatataataagcacttaatc 105  Q
    ||||||||||||||||||||||| ||||| ||||||| |||| ||||    
T  55272909 tactcatttataattttttaataatagtacataataaacactcaatc 55272863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 54425591 - 54425526
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcac 99  Q
    |||||||| || || |||||||  ||| ||||||||| ||||||||||||||||  ||||||||||    
T  54425591 ttaaatgggtcacacgtgtacatattattcatttatagttttttaatagtagtacctaataagcac 54425526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 55272855 - 55272818
Alignment:
Q  152 atcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  55272855 atcaactatcaataactttatatcattatatttcaatt 55272818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 6710810 - 6710985
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| |||||| | |  |||||||| ||||| |||||||  | ||||||||||||||||||||||||||||| ||||||||||| | || || |||    
T  6710810 gagacatccatttttggatttttaaatgggtctcacgtgtacagatcactcatttataattttttaatagtagtatctaataagcactcagtcactccaa 6710909  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     |||| || ||||||||| |||||||||  |||  | ||||||||||||||||| ||||||||||||||||| ||||    
T  6710910 cctag-atctcacacaaagttcttaaatagaatcaattaatcaactatcaataactttatatcattacattttaatt 6710985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 65383 - 65507
Alignment:
Q  65 tttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaat 164  Q
    |||||||||||||||| |||||| ||||||| |||||||||||| ||||| | ||| |||||||||||| |||||||| |   | |||||||||||||||    
T  65383 tttataattttttaattgtagtacataataaacacttaatccctccaatccaacatctcacacaaatttattaaatgagaaccattaatcaactatcaat 65482  T
Q  165 aattttatatcattacatttcaatt 189  Q
    || ||| ||||||||||||||||||    
T  65483 aagtttgtatcattacatttcaatt 65507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 11922111 - 11921964
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa 130  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||  ||| ||||||| ||| ||| ||| | |  || |||||||||    
T  11922111 tacttaaatgggtctcacgtgtacacattactcatttataattttttaatagtagtacctaaaaagcactcaattcctccaaccca-aatctcacacaaa 11922013  T
Q  131 tttcttaaatgaaatatactaatcaactatcaataattttatatcatta 179  Q
    |||||||||||  |  ||||||||||||| |||||| ||||||||||||    
T  11922012 tttcttaaatgggacctactaatcaactaccaataactttatatcatta 11921964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 34820868 - 34820993
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||| ||||||| |||||| ||| |||||||||||| |||   |||||||||||||||||||||||| | ||  ||  ||||||||||||     
T  34820868 atttataatttttaaatagtaatatatattaaacacttaatccctccaactcagcatttcacacaaatttcttaaacggaacttatcaatcaactatcag 34820967  T
Q  164 taattttatatcattacatttcaatt 189  Q
    ||| ||||||||||||||||| ||||    
T  34820968 taactttatatcattacattttaatt 34820993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 26312646 - 26312485
Alignment:
Q  23 ttttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcattt 122  Q
    ||||| |||||||||| || || || |||||||| | ||||||||||||||||||||||||||||  ||||||||||| ||| ||| ||| ||   || |    
T  26312646 tttttgggtacttaaacgggtcacacgtgtacacatcactcatttataattttttaatagtagtacctaataagcactcaattcctccaa-ctcagatct 26312548  T
Q  123 cacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttc 185  Q
    ||||||||||| ||||||  ||   |||||||||||| |||||| ||||| ||||||||||||    
T  26312547 cacacaaatttattaaatagaacccactaatcaactaccaataactttatgtcattacatttc 26312485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 36887507 - 36887683
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| |||||| |||| ||||||||||  |  |||||||| | ||| |||||||| ||||||||| |||||| ||||||  ||| | ||||||||     
T  36887507 gagacatccatttttgggtatttaaatggatgccgcgtgtacacatcacttatttataaatttttaataatagtatctaataataactcagtcccttcag 36887606  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
       ||  | ||||| ||| ||||||||||| ||  ||||||||||||||||||| ||||||||||| ||||||||||    
T  36887607 cgcagagtctcacaaaaaattcttaaatgagatccactaatcaactatcaataaatttatatcattgcatttcaatt 36887683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 18970120 - 18970005
Alignment:
Q  75 tttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatat 174  Q
    |||||||||||||  |||||| |||| |||| ||||||   ||| | |||||||||||||||||||||||   ||||||||||||| ||||| |||||||    
T  18970120 tttaatagtagtacctaataaacactcaatctcttcaactcagcctctcacacaaatttcttaaatgaaactcactaatcaactattaataactttatat 18970021  T
Q  175 cattacatttcaattg 190  Q
     |||||||||| ||||    
T  18970020 aattacatttcgattg 18970005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 44583399 - 44583478
Alignment:
Q  110 caatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||| ||||||||  |||||||||||||||||| |||||||||| |||| |||| |||||||||| |||||||||||    
T  44583399 caatctaacatttcacgaaaatttcttaaatgaaatttactaatcaaatatccataaatttatatcatcacatttcaatt 44583478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 3669013 - 3668848
Alignment:
Q  24 tttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttc 123  Q
    |||| |||| |||||||  ||||| ||||| |  ||||| ||||||||||||||||||||||||  ||||||| ||| ||||| | |||   |  || ||    
T  3669013 ttttaggtatttaaatgagtctcacgtgtatatattactaatttataattttttaatagtagtaattaataagtactcaatccgtccaactcaatatatc 3668914  T
Q  124 acacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||| | |   |||||| ||||||| |||||||||||||||||| ||| ||||    
T  3668913 acacaaatttcttaaataagaaccactaattaactatcgataattttatatcattacgttttaatt 3668848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 16117859 - 16118016
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    ||||||| ||| |||||||| ||||| |||||||  | ||||||||||||||||||||||  | ||  ||||||||||| ||| ||| ||| |  ||||     
T  16117859 attttttagtatttaaatgggtctcacgtgtacatatcactcatttataattttttaatatcaatacctaataagcactcaattcctccaaccatgcatc 16117958  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcatta 179  Q
    ||||||| ||| | ||||||  ||  || |||||||||||||||| ||||||||||||    
T  16117959 tcacacatattccataaatggtatccacaaatcaactatcaataactttatatcatta 16118016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 36267159 - 36267001
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtag--------tatataataagcacttaatcccttcaat 113  Q
    |||||||| ||||||| | | || || |||||||| | ||||||||||||||||||||||||||        ||| ||||||| |||||||| ||||||     
T  36267159 attttttgttacttaacttggtcgcacgtgtacacatcactcatttataattttttaatagtagattagtagtatctaataagtacttaatctcttcaac 36267060  T
Q  114 ctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttat 172  Q
    | ||||| |||||| |||||||||||||| |   |||||||| |||||||||| |||||    
T  36267059 ccagcatctcacacgaatttcttaaatgagacccactaatcagctatcaataactttat 36267001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 6459256 - 6459089
Alignment:
Q  21 aattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcat 120  Q
    ||||||||| ||||||||||  |||||||||||||| | ||| ||||||||||||| || |  | ||| |||||| |||| ||||| |  || | | | |    
T  6459256 aattttttgatacttaaatgagtctcatgtgtacacatcactgatttataattttt-aacaacaatatttaataatcactcaatccttcaaacccaacct 6459158  T
Q  121 ttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     ||| ||||||||| ||||||| |  |||||||||||||||||||||||| |||||||| |||| ||||    
T  6459157 ctcatacaaatttcgtaaatgagacttactaatcaactatcaataattttctatcattatattttaatt 6459089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 15269373 - 15269309
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagt 86  Q
    |||||| ||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  15269373 atttttcggtacttaaatgggtctcacatgtacacattactcatttataattttttaatagtagt 15269309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 34375224 - 34375059
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||| | ||||||||| |||||||  ||||||| | ||| ||||||||||||||||||||||||  ||||||| | | ||||||| ||| |||  ||     
T  34375224 atttttggatacttaaatagatctcacatgtacacatcacttatttataattttttaatagtagtacctaataagaattcaatccctccaacctaagatc 34375125  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||| | |||  |||||||||  |   | ||||||||||||||||| ||||||| ||||||||||||||    
T  34375124 tcaaaaaaa--tcttaaatgggacccattaatcaactatcaataactttatattattacatttcaatt 34375059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 9583318 - 9583152
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||| ||| ||||||||  ||||| |||||| | | ||| ||||||||||||||||||||||||| ||||||||||| |||| | |||| ||   ||     
T  9583318 atttttgggttcttaaatgagtctcacgtgtacgcatcacttatttataattttttaatagtagtatctaataagcactcaatcac-tcaaactcagatc 9583220  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| |||||||||   |   ||||||||| | ||||||| |||| ||||||| |||||||||    
T  9583219 tcacacaaagttcttaaattggacccactaatcaattgtcaataactttacatcattatatttcaatt 9583152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 17603948 - 17604047
Alignment:
Q  66 ttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaata 165  Q
    ||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||| |||  |||| ||||||||| | ||  |||||||| | |||||||    
T  17603948 ttataattttttaatagtagtacttaataagcatttaatcctttcaatctagcatctcaagcaaaattcttaaattagattcactaatcatcaatcaata 17604047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 32887543 - 32887716
Alignment:
Q  14 agacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaat 113  Q
    ||||||| ||||||| |||||||||| ||| | | ||||| ||   | |||||||||||||||||||||| ||   ||||||||| | |||| || ||||    
T  32887543 agacatccatttttttgtacttaaatagattttacgtgtatacaacattcatttataattttttaatagtggtgcctaataagcattcaatctctccaat 32887642  T
Q  114 ctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    | || || ||||| |||||| |||||| ||||  ||||||||||||| ||||| ||||||| ||||||||| ||||    
T  32887643 ccag-atatcacataaattttttaaat-aaatccactaatcaactataaataactttatattattacattttaatt 32887716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 9733817 - 9733660
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa 130  Q
    |||||||||||||| || |||||||| | ||| |||||||| | ||||||| |||||| ||||||| ||| ||| ||| |||   ||||| ||||| | |    
T  9733817 tacttaaatggatcacacgtgtacacatcacttatttataactctttaataatagtatctaataagaactcaattcctccaactcagcatctcaca-aca 9733719  T
Q  131 tttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
     ||||||||||  |  ||| ||||||||| |||||||||||||||  ||||||||||||    
T  9733718 attcttaaatgggacttaccaatcaactagcaataattttatatctctacatttcaatt 9733660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 30465396 - 30465287
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaa 163  Q
    ||||||||||||||||||||||||| ||||||| | | ||||||||||| | ||||||||||| |  ||| |||||| ||||  | |||| |||||||||    
T  30465396 atttataattttttaatagtagtatctaataagaattcaatcccttcaacccagcatttcaca-attttttttaaataaaattcattaattaactatcaa 30465298  T
Q  164 taattttatat 174  Q
    ||| |||||||    
T  30465297 taactttatat 30465287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 37347784 - 37347947
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctag---c 118  Q
    |||||| ||| ||||||||||||||| |||||||| | | | ||||||||||||||||||||| ||| ||||||| | | ||||||| ||| | ||   |    
T  37347784 atttttgggttcttaaatggatctcacgtgtacacatcatttatttataattttttaatagtaatatctaataagaattcaatccctccaacccagcatc 37347883  T
Q  119 atttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacat 182  Q
    || ||||||||| |||||||||   |  ||| |||||| | ||||||| |||||| ||||||||    
T  37347884 atctcacacaaagttcttaaatatgacctacaaatcaagtgtcaataactttataccattacat 37347947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 14332037 - 14332097
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatag 82  Q
    ||||||||| |||||||||||||||| |||||||| | |||||||||||||||||| ||||    
T  14332037 attttttggaacttaaatggatctcacgtgtacacatcactcatttataattttttgatag 14332097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 28857255 - 28857118
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||||||||||||||||| ||| |  | ||||| | | | ||||||||||||||| ||||| ||  ||||||| | ||||||| | ||| | |||||     
T  28857255 attttttggtacttaaatgggtcttacttatacacataatttatttataattttttagtagtaatacttaataagaatttaatccttccaacccagcatc 28857156  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaacta 159  Q
    | ||||||||||||||||| | |  |||||||||||||    
T  28857155 ttacacaaatttcttaaataagacttactaatcaacta 28857118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 41264967 - 41265070
Alignment:
Q  68 ataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataat 167  Q
    ||||||||||||||||||||| |||||  | || ||||| ||||| ||| ||| |||||||| ||| |||||||||||  ||||||||| |||||||||     
T  41264967 ataattttttaatagtagtat-taatagtc-ctcaatcctttcaacctaacatctcacacaatttttttaaatgaaattcactaatcaattatcaataac 41265064  T
Q  168 tttata 173  Q
    ||||||    
T  41265065 tttata 41265070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 5038848 - 5038721
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaa--atgaaatatactaatcaactatc 161  Q
    |||||||||||||||||| |||||  ||||||||| | |||| || ||| |  |||| |||||||||||||||||   ||  |   ||||||||||||||    
T  5038848 atttataattttttaataatagtaattaataagcattcaatctctccaacccggcatctcacacaaatttcttaattgtgtgacccactaatcaactatc 5038749  T
Q  162 aataattttatatcattacatttcaatt 189  Q
    ||||||||||||| |||| |||| ||||    
T  5038748 aataattttatattattatattttaatt 5038721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 40999753 - 40999689
Alignment:
Q  124 acacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaat 188  Q
    |||||||||||||||||| ||   |||||||||| |||||||| |||||||||||| ||||||||    
T  40999753 acacaaatttcttaaatggaacccactaatcaaccatcaataactttatatcattatatttcaat 40999689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 17928149 - 17928086
Alignment:
Q  73 tttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttctt 136  Q
    |||||||||||| ||| ||||||||||||||||||||||| | | ||| || ||||||||||||    
T  17928149 tttttaatagtactatctaataagcacttaatcccttcaaccaaacatctcgcacaaatttctt 17928086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 44887291 - 44887354
Alignment:
Q  126 acaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||| |||||||| ||  | ||||||||||||||||| |||||||||||| |||||||||    
T  44887291 acaaattttttaaatgagatccaataatcaactatcaataaatttatatcattatatttcaatt 44887354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 37648278 - 37648391
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaa-atttcttaaatgaaatatactaatcaactatca 162  Q
    |||| |||||||||| || |||||  ||||||||||| ||||||| ||||| | ||||||||||||  ||| |||||||  || |  |||||||| ||||    
T  37648278 atttgtaattttttagtaatagtacctaataagcactcaatccctccaatccaacatttcacacaattttttttaaatg-gatcttttaatcaaccatca 37648376  T
Q  163 ataattttatatcat 177  Q
    |||||||||||||||    
T  37648377 ataattttatatcat 37648391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 13022797 - 13022838
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  13022797 actaatcaactatcaataaatttatattattacatttcaatt 13022838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 34234935 - 34234894
Alignment:
Q  148 actaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  34234935 actaatcaattatcaataactttatatcattacatttcaatt 34234894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 6562986 - 6562951
Alignment:
Q  154 caactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6562986 caactatcaataactttatatcattacatttcaatt 6562951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 39368783 - 39368744
Alignment:
Q  150 taatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  39368783 taatcaactatcaataattttatatttttacatttcaatt 39368744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 41068866 - 41068904
Alignment:
Q  151 aatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  41068866 aatcaactatcaataactttatatcattatatttcaatt 41068904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 3948936 - 3948997
Alignment:
Q  23 ttttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagta 84  Q
    ||||||||||||||||| ||||  |||||||||| | | || |||||||| |||||||||||    
T  3948936 ttttttggtacttaaatagatcatatgtgtacacatcattcgtttataatattttaatagta 3948997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 31050064 - 31050121
Alignment:
Q  30 gtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagta 87  Q
    |||||||||||  |||||  ||||||| | ||| ||||||||||||||||||||||||    
T  31050064 gtacttaaatgagtctcacatgtacacatcacttatttataattttttaatagtagta 31050121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 3949058 - 3949094
Alignment:
Q  153 tcaactatcaataattttatatcattacatttcaatt 189  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  3949058 tcaattatcaataactttatatcattacatttcaatt 3949094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 8798683 - 8798731
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatccct 108  Q
    |||||||||||||||||||||| || ||| ||||||||| | |||||||    
T  8798683 actcatttataattttttaataataatatctaataagcagtcaatccct 8798731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 387911 - 387740
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| | |||| ||| ||||||||  || ||  ||||||| | ||||||||||||||||||||||||||||| | ||| ||||| ||| | |||||    
T  387911 gagacatctaattttgggtgcttaaatgagtcccacatgtacacataactcatttataattttttaatagtagtatctgataggcactcaattcattcaa 387812  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacattt 184  Q
    || | ||||||||||||||||||||||| | |   ||||||||||||||||||| ||||||| |||| ||||    
T  387811 tccaacatttcacacaaatttcttaaataagacccactaatcaactatcaataactttatattattatattt 387740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 31743548 - 31743668
Alignment:
Q  62 tcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatc 161  Q
    ||||||||||| ||||||||||||||| ||||||| ||| ||||||||||| | | ||| | |||||||||| |||||||| ||| | |||||||||||     
T  31743548 tcatttataatattttaatagtagtatctaataagaactcaatcccttcaaccgaacatcttacacaaatttattaaatgagatacattaatcaactatt 31743647  T
Q  162 aataattttatatcattacat 182  Q
    ||||| |||||||||||||||    
T  31743648 aataactttatatcattacat 31743668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 32658373 - 32658539
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||| ||| ||||||||| ||||| ||| |||| | ||||||||||||||||||||||||||||  |||||| |||| |||| || ||| | |  ||     
T  32658373 atttttaggttcttaaatgggtctcacgtggacacatcactcatttataattttttaatagtagtacctaataaacactaaatcactccaaccca-tatc 32658471  T
Q  122 tcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||| ||||||||| || |||| ||||    
T  32658472 tcacacaaagttcttaaatggaatccactaatcaactatcaataactttatatcagtatattttaatt 32658539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 32977310 - 32977486
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataatttttt-aatagtagtatataataagcacttaatcccttca 111  Q
    |||||| | |||||| ||||||||||||| || || | |||||| | |||||||||| ||||||| ||||||||||  ||||||||||| ||||||| ||    
T  32977310 gagacacccatttttgggtacttaaatgggtcccacgcgtacacatcactcatttatgatttttttaatagtagtacctaataagcactcaatccctcca 32977409  T
Q  112 atctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    | | || || ||||||||| ||||||||||  |   ||||||||||||||||||| |||||| || ||||||||||||    
T  32977410 acccag-atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttataccactacatttcaatt 32977486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 7693878 - 7694037
Alignment:
Q  31 tacttaaat-ggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaa 129  Q
    ||||||||| || ||||| || ||||| | ||||||||||||||||||| || |||||  ||||||| ||| ||||||| ||| | |  || ||||||||    
T  7693878 tacttaaattgggtctcacgtatacacatcactcatttataattttttagtaatagtacctaataagtactcaatccctccaacccataatctcacacaa 7693977  T
Q  130 atttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||| ||||||| ||   ||||||||||||||||||| || |||||| ||||||||||||    
T  7693978 attttttaaatggaacccactaatcaactatcaataacttcatatcaatacatttcaatt 7694037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 3543349 - 3543259
Alignment:
Q  49 gtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaa 139  Q
    |||||||| |||||||||||||| |||||||||||| ||| ||| ||| ||||||||||| ||||  ||||| ||||||||||||||||||    
T  3543349 gtgtacacattactcatttataaatttttaatagtattatctaacaagtacttaatccctccaattcagcatctcacacaaatttcttaaa 3543259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 33755925 - 33755768
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaa 112  Q
    |||||||| ||| |||||| ||||||||| ||||| ||||| || ||||| |||||| |||||||||||||||||  ||||||| | | |||| || |||    
T  33755925 gagacatccattctttggttcttaaatgggtctcaagtgtatacattacttatttattattttttaatagtagtacctaataagtattcaatcactccaa 33755826  T
Q  113 tctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataatttta 171  Q
     |    || ||||||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  33755825 -cacaaatctcacacaaaattcttaaatgaaatccactaatcaactatcaataacttta 33755768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 6988322 - 6988186
Alignment:
Q  52 tacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatacta 151  Q
    ||||| |||||  ||||||||||| ||||||| |||  ||||||  |||||||| ||| ||||||| || ||| |||| ||| ||||||||||  |||||    
T  6988322 tacacattacttgtttataattttataatagtggtacctaataaaaacttaatcactttaatctagtatctcatacaatttt-ttaaatgaaacctacta 6988224  T
Q  152 atcaactatcaataattttatatcattacatttcaatt 189  Q
    | |||||||||||||||||||||||| |||||| ||||    
T  6988223 aacaactatcaataattttatatcatcacattttaatt 6988186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 18804218 - 18804290
Alignment:
Q  117 gcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||| ||||||||||||| |||||| ||  |||||||||||||||||||||||||||| ||||||||||||||    
T  18804218 gcatctcacacaaatttcataaatggaacttactaatcaactatcaataattttatattattacatttcaatt 18804290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 5002307 - 5002484
Alignment:
Q  13 gagacatcaattttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaat--agtagtatataataagcacttaatcccttc 110  Q
    |||||||| |||||| |||  |||||||| ||| | |||||||| | ||| ||||||||||||||  |  |||||||| ||||||||||| |||| || |    
T  5002307 gagacatccatttttgggtttttaaatgggtcttacgtgtacacatcacttatttataatttttttttgtagtagtatctaataagcactcaatcactcc 5002406  T
Q  111 aatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    || | || || ||||||||| ||||||||||  |   ||||||||||||||||||| ||||||| |||| |||||||||    
T  5002407 aaccgag-atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttatattattatatttcaatt 5002484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 22281763 - 22281881
Alignment:
Q  70 aattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattt 169  Q
    ||||||||||||||||||  ||||||||||| |||| || ||| || | || || |||||| ||||||||||  ||  |||||||||| |||||||| ||    
T  22281763 aattttttaatagtagtacctaataagcactcaatcactccaaccttg-atctcccacaaagttcttaaatgggattcactaatcaaccatcaataactt 22281861  T
Q  170 tatatcattacatttcaatt 189  Q
    |||||||||| |||||||||    
T  22281862 tatatcattatatttcaatt 22281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 25099186 - 25099087
Alignment:
Q  90 taataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||| ||||| |||| |||||||| || |||| | |||| ||| |||||||| |  ||||||||||||||||||||||||||||||||| |||| ||||    
T  25099186 taatacgcactcaatctcttcaatcgagtattttatacaatttttttaaatgatacttactaatcaactatcaataattttatatcattatattttaatt 25099087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 6321760 - 6321634
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttca-atctagcatttcacacaaatttcttaaatgaaatatactaatcaact 158  Q
    |||||||||||||||||||| | |||||| || |||||||| || ||||||  ||||||||||||||||||||||||||||  | ||  |||||| |  |    
T  6321760 actcatttataattttttaacactagtatctactaagcactcaa-cccttctcatctagcatttcacacaaatttcttaaacaagatccactaattatat 6321662  T
Q  159 atcaataattttatatcattacatttcaat 188  Q
    ||||||||   |||||||||||||||||||    
T  6321661 atcaataa--ctatatcattacatttcaat 6321634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 3435991 - 3436059
Alignment:
Q  28 tggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataag 96  Q
    ||||||||||||| ||| ||||| ||||| | | |||||| |||||||||||||||| ||| |||||||    
T  3435991 tggtacttaaatgaatcacatgtatacacatcattcatttgtaattttttaatagtaatatctaataag 3436059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 9491626 - 9491702
Alignment:
Q  90 taataagcacttaatcccttcaatctagcatttcacacaaatttcttaaatgaaatatactaatcaactatcaataa 166  Q
    ||||||||||| ||| ||| ||| | | ||| ||||||||||||| ||||||  | |||||||||||||||||||||    
T  9491626 taataagcactaaatacctccaacccatcatctcacacaaatttcataaatgggacatactaatcaactatcaataa 9491702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 31743462 - 31743386
Alignment:
Q  64 atttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaat 140  Q
    |||||||||| |||||| | |||||||||||| |||| ||  | |||||   |||||||||||||||||||||||||    
T  31743462 atttataattatttaatggcagtatataataaacactcaactctttcaactcagcatttcacacaaatttcttaaat 31743386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 3705676 - 3705810
Alignment:
Q  31 tacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaa 130  Q
    ||||||||| ||| ||| | |||||| | ||| ||||  ||||||||||||||||||  ||||||| | | ||||| | |||||  ||||   |||||||    
T  3705676 tacttaaatagatttcacgcgtacacatcacttatttggaattttttaatagtagtacctaataagtattcaatccttccaatcctgcatcatacacaaa 3705775  T
Q  131 tttcttaaatgaaatatactaatcaactatcaata 165  Q
    ||||||||| ||||   | ||||||||||||||||    
T  3705776 tttcttaaaggaaaatcattaatcaactatcaata 3705810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 12119792 - 12119735
Alignment:
Q  42 atctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcac 99  Q
    ||||||||||||||  | | |||||||||||||||||| |||||| | ||||||||||    
T  12119792 atctcatgtgtacatatcagtcatttataattttttaacagtagtctttaataagcac 12119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 63727 - 63609
Alignment:
Q  22 attttttggtacttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatt 121  Q
    |||||||||||||||||| | ||||| ||||||| || ||| ||||||||||||||||||||||||  ||||||| ||| |||| ||  || | | |||     
T  63727 attttttggtacttaaataggtctcacgtgtacatgtcactaatttataattttttaatagtagtacctaataaggactcaatctctctaacccatcatc 63628  T
Q  122 tcacacaaatttcttaaat 140  Q
    ||||||| |||||||||||    
T  63627 tcacacatatttcttaaat 63609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 2933 - 2997
Alignment:
Q  125 cacaaatttcttaaatgaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||||||||||||   | | ||||||| |||||||||||||||||||||||| |||||||||    
T  2933 cacaaatttcttaaataggacacactaatccactatcaataattttatatcattatatttcaatt 2997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 31762 - 31916
Alignment:
Q  34 ttaaatggatctcatgtgtacacgttactcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaattt 133  Q
    |||||||| |||||||| | ||| | ||||||||||||||| |||||||||||||  |||||||| | |||  || ||| | || |||||||||||| ||    
T  31762 ttaaatgggtctcatgtattcacatcactcatttataatttcttaatagtagtatcaaataagcattcaattactccaacccag-atttcacacaaagtt 31860  T
Q  134 cttaaat-gaaatatactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    ||||||| | | || | |||||||||| |||||| ||||||| |||| |||| ||||    
T  31861 cttaaataggacta-agtaatcaactaacaataactttatatgattatatttaaatt 31916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 6132 - 6174
Alignment:
Q  147 tactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||||||||||| |||| || ||||||    
T  6132 tactaatcaactatcaataattttatattattatatatcaatt 6174  T

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Target: scaffold0709 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 6150 - 6192
Alignment:
Q  147 tactaatcaactatcaataattttatatcattacatttcaatt 189  Q
    |||||||||||||||||||||||||||| |||| || ||||||    
T  6150 tactaatcaactatcaataattttatattattatatatcaatt 6192  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 55763 - 55842
Alignment:
Q  60 actcatttataattttttaatagtagtatataataagcacttaatcccttcaatctagcatttcacacaaatttcttaaat 140  Q
    |||||||||||||||||||||| |||||  |||||| |||| | || |||||| | | ||| ||| |||||||||||||||    
T  55763 actcatttataattttttaatattagtagctaataa-cactcagtctcttcaacccaacatctcatacaaatttcttaaat 55842  T

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