View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_1 (Length: 518)
Name: NF3838_low_1
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_1 |
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| [»] scaffold0293 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 473
Target Start/End: Complemental strand, 37597024 - 37596584
Alignment:
| Q |
14 |
catcaatgaacggtggtggcttgtttcggaaagtaggaatttcaagtggatactttccttcattcatagtattcggtttgggaaatgccatagccatctt |
113 |
Q |
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| T |
37597024 |
catcaatgaacggtggtggcttgtttcggaaagtaggaatttcaagtggatactttccttcattcatagtattcggtttgggaaatgccaaagtcatctt |
37596925 |
T |
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| Q |
114 |
gtgaccttacatgcacaccattcacaccaatgcagccaattatcatctcacgtgcccatcaaattatatgtgagcagtaggggatcttgaannnnnnngt |
213 |
Q |
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| T |
37596924 |
gtgaccttacatgcacaccattcacaccaatgcagccaattatcatctcacgtggccataaaattataaatgagcagtagcggatcttgagttttttttt |
37596825 |
T |
|
| Q |
214 |
tg--ttgttgttgagggtgccaaataattatggaatatatgttaaatagtttcaaaccggtctaatggttcatttacttgaattaacatgggggatgacg |
311 |
Q |
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| T |
37596824 |
tgttttgttgttgaaggtgccaaataattatggaatatatgttaaatagtttcaaaccgatctagtggttcatttgcttgaattaacatgggggatgacg |
37596725 |
T |
|
| Q |
312 |
gttcaagtcatggcaggaacattggtacgggggatcgaacacacatccaatagaatattagaagaatgactatccgctgcgccaaccagaaattatgtga |
411 |
Q |
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| T |
37596724 |
gttcaagtcatgataggaacattgatacg---------------------tataattttagaagaatgactatccactgcgccaaccaaaaattatgtga |
37596646 |
T |
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| Q |
412 |
aataaaacacataatatgatatttatagaaaagttagggagtgtcacctatggatctccaag |
473 |
Q |
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| T |
37596645 |
aataacacgcataatatgatatttatagaaaagttagggagtgtcacctatggatctccaag |
37596584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 5232440 - 5232516
Alignment:
| Q |
374 |
agaatgactatccgctgcgccaaccagaaattatgtgaaataaaacacataatatgatatttatagaaaagttaggg |
450 |
Q |
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| T |
5232440 |
agaataaccatccactgcgccaaccagaaactatgcgaaataatacgcataacatggtatttatagaaaagttaggg |
5232516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 5232311 - 5232352
Alignment:
| Q |
226 |
gggtgccaaataattatggaatatatgttaaatagtttcaaa |
267 |
Q |
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| T |
5232311 |
gggtgccaaatatttatggaatatatattaaacagtttcaaa |
5232352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0293 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0293
Description:
Target: scaffold0293; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 1104 - 1063
Alignment:
| Q |
226 |
gggtgccaaataattatggaatatatgttaaatagtttcaaa |
267 |
Q |
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| T |
1104 |
gggtgtcaaataattatggaatatatattaaatagtttcaaa |
1063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 50432613 - 50432565
Alignment:
| Q |
219 |
ttgttgagggtgccaaataattatggaatatatgttaaatagtttcaaa |
267 |
Q |
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| T |
50432613 |
ttgttgggggtgccaaatatatatggaatatatattaaatggtttcaaa |
50432565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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