View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3838_low_10 (Length: 336)
Name: NF3838_low_10
Description: NF3838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3838_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 24386191 - 24385865
Alignment:
| Q |
11 |
caaaggttaccaaagttcttcattgtcttcaaccttcatacttgttaggcttgatttaactatcaacaaagttttgaataataataaaagatagtaggct |
110 |
Q |
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| T |
24386191 |
caaaggttaccaaagttcttcattgtcttcaaccttcatacttgttaggcttgatttaactatcaacaaagttttgaataataataaaagatagtaggct |
24386092 |
T |
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| Q |
111 |
atattctcacaaccaatctaccttattgtgtgcttgaagaatgttgtcttacctcatcgacagaaagccatcgaacaatccgaaggacttcatttatgtg |
210 |
Q |
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| T |
24386091 |
atattctcacaaccaatctaccttattgtgtgcttgaagaatgttgtcttacctcatcgacagaaagccatcgaacaatccgaaggacttcatttatgtg |
24385992 |
T |
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| Q |
211 |
tttgtgcttgttgagttcttggttgatacaaagtgttaccacaacaacatgagatcaaagtgttccactaatataaagtctgagcaaataaaataaat-t |
309 |
Q |
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| T |
24385991 |
tttgtgcttgttgagttcttggttgatacaaagtgttaccacaacaacatgagatcaaagtgttccactaatataaagtctgagcaaataaaataaattt |
24385892 |
T |
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| Q |
310 |
tttctctttctttctttcatcaatcta |
336 |
Q |
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| T |
24385891 |
tttttctttctttctttcatcaatcta |
24385865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 16153239 - 16153393
Alignment:
| Q |
17 |
ttaccaaagttcttcattgtcttcaaccttcatacttgttaggcttgatttaactatcaacaaagttttgaataataataaaagatagtaggctatattc |
116 |
Q |
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| T |
16153239 |
ttaccaaagttcttcattgtcttcaattttcatacttgttaggct-gatttaactatcaacaaagttttgaataataataaaagatagtagattatattc |
16153337 |
T |
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| Q |
117 |
tcacaaccaatctaccttattgtgtgcttgaagaatgttgtcttacctcatcgaca |
172 |
Q |
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| T |
16153338 |
tcacaaccaatctaccttattgtgggcttgaagaaagttgtcttatctcatggaca |
16153393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 16158249 - 16158338
Alignment:
| Q |
17 |
ttaccaaagttcttcattgtcttcaaccttcatacttgttaggcttgatttaactatcaacaaagttttga--ataataataaaagatag |
104 |
Q |
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| T |
16158249 |
ttaccaaagttgttcattgttttcaattttcatacttgttaggcttgatttaactatcaacaaagtttttaatataataataaaagatag |
16158338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 16158374 - 16158478
Alignment:
| Q |
140 |
gtgcttgaagaatgttgtcttacctcatcgacagaaagccatcgaac--aatccgaaggacttcatttatgtgtttgtgcttgttgagttcttggttgat |
237 |
Q |
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| T |
16158374 |
gtgcttgaagaaagttgtcttacctcatggacataaagctataataagaaatacaaatgacttcatttatgt-tttgtgcttgttgagttcttcgttgat |
16158472 |
T |
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| Q |
238 |
acaaag |
243 |
Q |
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| T |
16158473 |
acaaag |
16158478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 264
Target Start/End: Complemental strand, 8774806 - 8774669
Alignment:
| Q |
125 |
aatctaccttattgtgtgcttgaagaatgttgtcttacctcatcgacagaaagccatcgaacaatccgaaggacttcatttatgtgtttgtgcttgttga |
224 |
Q |
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| T |
8774806 |
aatctaacatattgtgtgcataaagaaagttgtcttacctaacaga--gaaagctatcaggcaatacaaaggacttcatttatgtgtttttgcttgttaa |
8774709 |
T |
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| Q |
225 |
gttcttggttgatacaaagtgttaccacaacaacatgaga |
264 |
Q |
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| T |
8774708 |
gctcttggttaatgcaaaatgttaccacaacaacatgaga |
8774669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 48954630 - 48954666
Alignment:
| Q |
24 |
agttcttcattgtcttcaaccttcatacttgttaggc |
60 |
Q |
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| T |
48954630 |
agttcttcgttgtcttcaatcttcatacttgttaggc |
48954666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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